Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g85 ATGGTTGAGTATTTTGGGCACCAATTATCGGGTTTTGACTCCACTATCAATGAGCGAGTCCAATCTTATGGGTCCCGTTATGCCAAGTCACCTATCATATATGGTGTTGTGAGTCGACCCAAGGCTTTGATTGTTCTCTGGTTCTCAATGCTGAAGGATTTTTACCAGTATCATTCTTCCCTTTCCTTTTTCTCTCTTCAAAAGGCAACAATGAAGGTCCAGATGCTGTCTACCAAGCTGATAAAACCATCATCTCCCACGCCATCTCACCTCCGGACCTTGAAACTATCCCCTATTGACCAACTATTTACATATACGGCCAAGCCGTCTGCTATTTACTACTACTCTGCCGAGAGCAGCAGCAGCAGCAGAAGTGAAGATGTTGAAAGACGAAACCGCTTGGAGACATCACTGTCAGAGACCCTGACTCTTTTCTACCCGCTAGCAGGAAGATACATCAAAGATAGTCACTCGGTTGATTGTAACGACGAAGGGGCTGAGTATTTGGAGGCCAAAGTAGAGGGCCAACTCAGTCAACTTCTAAGCAGGAGAGATGAGATGATCTACCAACTGGTTCATTTATCAGGCGGACAATCAACAAGTCCCGTAGCATCGATTCAGATCACCAGGTTTGATTGCGGAGGACTAGTCATTGGAGTTCGCATTCATCACATCGTTGTTGATGGATTCACTGCGGCTAGCTTTGTCACCGCTTGGGCTACTGCAAGCAGAGAAGGCGTAGGTAAATTAATTTTTCCGACTTTCGGCTTGACTTCTTTCTTCCCGGAGAATGATTTACCTATGCTGAAGCCAAGGCCTCCCCCGAAAATCTCTGAAACGAATAAGGTCGTGACCAGGAGGTTTGTGTTTGATGGGGCCAAAATATCGTCCCTCAAGGCCAGAGCTCATGACCCCAGCTTCCAACGGGAGCCTTCACGGGTGGCGGTGGTGACAGCCCTGATATGGAGAGCTCTCATGGGTGTAAGCAAGGCAAAACATGGACGCTTGAGGACTTCTCTAGCCTCCCACAGCATAAACTTGCGCCCAAAAATCGTCCCACCATTACCGCCCTTGTGCTGTGGAAACCTCACTACAAGGTATAAAGCCAGATTCACGGCGGACGATAGCAACGGGGAGTTGCCTGATTTGAAGGAGTTGGTGGGTTTACTAAGAGATGCCACAAAATCCAATGCAGCAATGCCTCGCGAGGATATGTACTCGACGGTGATAAAATCCAGGAATGAGTTACACGAAGATATGGAGGACGAAGAAGTAGATGTGTTTCTGTTCAGTAGCTGGAGTAGGCTGTCTTTCCACGAAGCCGATTTTGGTTGGGGGAAGCCAGTTTGGGTGAGTAAAATTCATTTTCCTGCTGACCAAATTTTTCTGTTGGACGGTGAAGGTGGTGATGGAATTGACGCATGGGTGGGCTTGAACAAACAAGACATGCTTCAGCTCCAGCAAGATGGCGACATTTTGGCCTTCACTTCCTCTTCGCCTTCCAGGTTCTACTTCAAGGCTTCCTTGGGCTCGCAGCCGGTTCTCGTCGTTGTTGCTGTGGCGGCTGTTTTTGCTTTCAGTGTTGTGTTTCTCAGCTATTCAAGGCGGAGGAAGAACTCCAGAGAGGTCTCAGGTCCCTCAGGTTTTGCAATATCCCAACTGAGCAGAGATGTTATGAACCAATTTATGGAGAGTGCAATTCTGGGTTTTGGAGATCTTCACAAGGAGACCTCTGAAAAAGAAAGCAGAGCTACAATGGACATAGTGGAAGAAGTCAGCCATGCTTCCAAAGATAAAGAGGCTCCATGGCAAGAAATTGCCTTGATGCAGGAAGAAACTCATGTCACTAATACATCAGAGTCATCTAGGTTGGATGTTCTTTCATCTAATGCTAAAAATTGTGTATCTGTAAGAGAAACTGAAGAGGCAGGCCCATCGATCCTGCCTCCTCTGCTCTCTGAGTCAGGCTTGCTGCAACCTCTAGTGTTTGCAACTGAAATGCCAGAATTGCAATTGGAAGAACGTCAAATGGAAACCGAGTTTGGTTATGACTTGTCCACACCGGTGGTTCAAACCAAGTCCATTGCTGCTTCTGTTCCGGACATCATTGCACTTGAAGGAGTGAATGAACGTAAGAATAGAGGCGGTAGACCTGGTGAAGAGAGTGAAATCATTTCCTTTACTGGCATTTTCAGAGATACCATTAGAGAAGAGCTTTACACATTTTATGAGGCAAAACAGTCAGTGATGAAACCTATGCCAAACTTCAATGGTATAAAAACATTAGCTTCAAATGCCTCCCTTTTGGATGGGAATGGTGTTTCTTTTCAAATGAGGAATGCTACATCAAAGGAAGCAGAATTATCAGCCCAAAACTCACATTCTTCTGCAGACTATGTTGAAGGAAAAATGTCTCTTTCTTGTTATAAAGAAGGTTCTTCTGGTAAAAGGAATGACCTAGTAAAAGGCAAGGGATTTCCCAGAGACAAGAACGGAAGGCTTCCACCTCTGAGCGACCATAGAAATCTGTCCCAGTTCCCTTTGTCTAATGGCATGACTGTCAAAGAAAAATATCATGATTCTGAGAAATTCAGTGCTTACAACCGATTATTAAGTGAAGGGAGGTTATCTGACTGCATACAATTGCTTGAAGATATGGAAAAAATGGGCTTGTTGGATATGGATAAGGTTTATCATGCAAAGTTTTTCAAAATCTGCAGAAGTCAAAAGGCTGTTACAGAAGCTTTTCGTTTTGCCAAGTTGATCCCAACTCCAACGTTGAGTACATTTAATATGCTTATGTCTGTGTGTGCAACTTCTCAAGATTCAGCTGGAGCATTCCAAGTTCTACAACTTGTACGGGAGGCCGGACTGAAAGCTGATTGCAAACTTTATACTACTTTGATATCAACTTGTGCTAAAAGTGGAAAAGTTGATGCAATGTTTGAAGTGTTTCATGAAATGGTTAATGCTGAAGTGGAACCAAATGTTCATACATATGGTGCACTTATTGATGGTTGTGGTAGAGCTGGACAAGTTGCTAAGGCATTTGGTGCTTATGGAATAATGAGGTCCAAGAAAGTGGAGCCAGATCGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAATCAGGAGCTGTGGATCGTGCTTTTGATGTGTTAGCAGAAATGAGGGCCGAGACACAACCAATAGACCCTGATCACATCACTGTTGGTGCATTGATAAAGGCATGCACAAATGCTGGTCAGGTTGATAGGGCACGAGAAGTATACAAGATGATTGATCAATATAACATTAAGGGCACTCCAGAGGTTTACACCATTGCTGTTAGTAGTCACAGCCAGATTGGTGATTGGGAGTTTGCATACAGTGTGTACACTGACATGACGAGGAAAGGCGTGGTTCCTGATGAGATGTTTCTCAGTGCATTGATAGATGTTGCTGGGCATGCTGGAAAGCTGGATGCTGCCTTTGAGGTCATACAAGAAGCCAGGATTCAAGGAATACCTCTTGGAATTGTATCATATAGCTCATTGATGGGGGCTTGTAGCAATGCCAAAAACTGGCAGAAGGCACTGGAGCTGTATGTGGATATTAAGTCCATGAAATTGAATCCAACGGTATCAACTATGAATGCCTTGATTACTGCCTTGTGTGAAGGCGAACAACTGGAGAAGGCTATGGAAGTTCTATCTGACATGAAGAGAGCGGGCTTGTGTCCAAACACTATCACATACTCCATTCTTTTAGTGGCCAGTGAAAAAAAAGATGATATAGATGTAGGCCTCATGATACTTTCTCAGGCGAGAAAAGACAGTGTAGCCCCTAATCTTGTTATGTGCAGATGCCTGGTTGGCATGTGCTTACGAAGATTCGAGAAGGCTTGTGCACTTGGTGAACCTGTTTTGTCTTTCAACTCAGGAAGGCCACAGATTGACAATAAATGGACCTCATCGGCCTTAATGGTCTACCGTGAAACAGTTTCAGCTGGAGTAATACCCACTATGGAACTTCTTTCACAAGTTTTGGGATGCCTGCAGTTTCCCCGTGATGTTTCCTTGAGAAATAGACTCATTGAGAATCTGGGAGTGAGTGCTGATGCTTCAAGACGCTCAAACCTATGTTCATTGATAGATGGATTTGGCGAATATGACTCTCGTGCTTTTTCATTACTTGAGGAAGCTGCTTCACTTGGAGTTGTGTCATGTGTATCCTTCAAGAAAAGTCCTGTCATTGTTGATACAAGGAGATTGCAGATCCGAATTGCTGAGGTGTACCTCTTAACAGTTTTGAAAGGTCTCAAGCATCGACTTGCTGCTGGAGCAAAGTTACCTAGCATGACCATTTTGCTACCTACGGAGACAACACAAGTTCTCGCTCCCAAGGGTGAGAAAGCAATTAACCTTGCAGGAAGGATTAGCCAGGCAGTTGCATCCATGTTGAGGAGGCTAGGACTACCTTACCAAGGGAATGAATCACGCGGGAAAATCAGAATCAATGGTCTTGCCACGAGAAGGTGGTTTCAGCCAAAGCTTGCTGGTCCTTTCAGTGGAAAAGTGGACGAGTTGAGCTCTTCTCAATCGCGGCTGGGAACAGGGATCAGTCTTCAGCAGCGCAAAATTCGAACAGGCAATCTCTCTTTGGACTAG 4653 44.75 MVEYFGHQLSGFDSTINERVQSYGSRYAKSPIIYGVVSRPKALIVLWFSMLKDFYQYHSSLSFFSLQKATMKVQMLSTKLIKPSSPTPSHLRTLKLSPIDQLFTYTAKPSAIYYYSAESSSSSRSEDVERRNRLETSLSETLTLFYPLAGRYIKDSHSVDCNDEGAEYLEAKVEGQLSQLLSRRDEMIYQLVHLSGGQSTSPVASIQITRFDCGGLVIGVRIHHIVVDGFTAASFVTAWATASREGVGKLIFPTFGLTSFFPENDLPMLKPRPPPKISETNKVVTRRFVFDGAKISSLKARAHDPSFQREPSRVAVVTALIWRALMGVSKAKHGRLRTSLASHSINLRPKIVPPLPPLCCGNLTTRYKARFTADDSNGELPDLKELVGLLRDATKSNAAMPREDMYSTVIKSRNELHEDMEDEEVDVFLFSSWSRLSFHEADFGWGKPVWVSKIHFPADQIFLLDGEGGDGIDAWVGLNKQDMLQLQQDGDILAFTSSSPSRFYFKASLGSQPVLVVVAVAAVFAFSVVFLSYSRRRKNSREVSGPSGFAISQLSRDVMNQFMESAILGFGDLHKETSEKESRATMDIVEEVSHASKDKEAPWQEIALMQEETHVTNTSESSRLDVLSSNAKNCVSVRETEEAGPSILPPLLSESGLLQPLVFATEMPELQLEERQMETEFGYDLSTPVVQTKSIAASVPDIIALEGVNERKNRGGRPGEESEIISFTGIFRDTIREELYTFYEAKQSVMKPMPNFNGIKTLASNASLLDGNGVSFQMRNATSKEAELSAQNSHSSADYVEGKMSLSCYKEGSSGKRNDLVKGKGFPRDKNGRLPPLSDHRNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHAKFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDIKSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDIDVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSSALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLIDGFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYLLTVLKGLKHRLAAGAKLPSMTILLPTETTQVLAPKGEKAINLAGRISQAVASMLRRLGLPYQGNESRGKIRINGLATRRWFQPKLAGPFSGKVDELSSSQSRLGTGISLQQRKIRTGNLSLD* 1551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 930889 960586 - Vvi3g85 Vvi3g85 783760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g85 1550 Pfam Pentacotripeptide-repeat region of PRORP 1004 1164 IPR033443 -
Vvi3g85 1550 SUPERFAMILY UROD/MetE-like 1 55 IPR038071 -
Vvi3g85 1550 Gene3D - 1 51 IPR038071 -
Vvi3g85 1550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 961 995 IPR002885 -
Vvi3g85 1550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1068 1102 IPR002885 -
Vvi3g85 1550 MobiDBLite consensus disorder prediction 811 846 - -
Vvi3g85 1550 MobiDBLite consensus disorder prediction 815 836 - -
Vvi3g85 1550 Gene3D - 16 30 IPR038071 -
Vvi3g85 1550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 996 1030 IPR002885 -
Vvi3g85 1550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1173 1207 IPR002885 -
Vvi3g85 1550 Gene3D Tetratricopeptide repeat domain 867 1026 IPR011990 GO:0005515
Vvi3g85 1550 Gene3D Tetratricopeptide repeat domain 1153 1387 IPR011990 GO:0005515
Vvi3g85 1550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1031 1065 IPR002885 -
Vvi3g85 1550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 508 1550 - -
Vvi3g85 1550 TIGRFAM PPR: pentatricopeptide repeat domain 1033 1060 IPR002885 -
Vvi3g85 1550 TIGRFAM PPR: pentatricopeptide repeat domain 1106 1139 IPR002885 -
Vvi3g85 1550 TIGRFAM PPR: pentatricopeptide repeat domain 998 1031 IPR002885 -
Vvi3g85 1550 TIGRFAM PPR: pentatricopeptide repeat domain 964 997 IPR002885 -
Vvi3g85 1550 TIGRFAM PPR: pentatricopeptide repeat domain 1175 1208 IPR002885 -
Vvi3g85 1550 TIGRFAM PPR: pentatricopeptide repeat domain 1211 1244 IPR002885 -
Vvi3g85 1550 Pfam Transferase family 71 490 - -
Vvi3g85 1550 Pfam PPR repeat family 1207 1251 IPR002885 -
Vvi3g85 1550 Pfam Cobalamin-independent synthase, Catalytic domain 1 48 IPR002629 GO:0003871|GO:0008270|GO:0009086
Vvi3g85 1550 Gene3D - 280 494 IPR023213 -
Vvi3g85 1550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1208 1242 IPR002885 -
Vvi3g85 1550 Gene3D - 69 268 IPR023213 -
Vvi3g85 1550 Gene3D Tetratricopeptide repeat domain 1037 1152 IPR011990 GO:0005515
Vvi3g85 1550 Pfam PPR repeat 965 990 IPR002885 -
Vvi3g85 1550 Pfam PPR repeat 1175 1203 IPR002885 -
Vvi3g85 1550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1103 1137 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g85 - - - vvi:100250266 2033.45
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35