Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g863 ATGGCTGCCTCCGTTTTGCTCCGATCTCTACGTCGCCGTGAACTCGCTTCCCCTTCTCTCTCTGCTTACAGAGCCTTGACTGGAAATACAAAGTCATCATGGAATACATCTCCAACAGGTTGGGCAAGTTTGGCTAGGGCGTTCAGCTCAAAGCCTGCTGGTAATGATGTCATTGGAATTGACTTGGGTACCACCAACTCGTGTGTTGCAGTTATGGAGGGAAAGAATCCCAAAGTTATTGAGAATTCTGAAGGATCTCGGACTACACCATCAGTGGTTGCCTTCAATCAGAAGGGAGAGCTACTTGTAGGTACTCCAGCAAAACGTCAGGCTGTGACAAACCCGACAAATACTGTTTTTGGGACCAAGCGTCTTATCGGCAGACGCTTTGATGATCCCCAGACACAAAAAGAAATGAAGATGGTTCCATATAAGATAGTTAGGGCTCCCAATGGAGATGCATGGGTTGAAGCTAATGGACAGCAATATTCTCCAAGCCAAATTGGGGCCTTTATTCTTACAAAGATGAAAGAAACTGCAGAGTCTTATCTTGGGAAGTCAGTCTCAAAAGCAGTGATCACTGTGCCAGCTTATTTCAATGATGCTCAGAGACAAGCAACAAAGGATGCCGGACGTATTTCTGGACTTGATGTGCAGAGAATCATTAATGAGCCCACTGCTGCAGCACTCTCCTATGGTTTAAACAATAAGGAGGGTCTTATAGCAGTTTTTGATCTTGGGGGTGGAACATTTGATGTTTCTATTCTGGAGATCTCTAATGGTGTTTTTGAGGTGAAAGCAACAAATGGTGATACGTTCTTGGGAGGAGAGGATTTTGACAATACTCTTTTGGAGTTTTTGGTGAGTGAGTTCAAGAGAACTGAGGGAATTGATCTTTCAAAGGATAGGCTTGCCCTGCAGAGACTCCGGGAAGCAGCTGAGAAAGCCAAGATAGAACTCTCATCAACATCTCAGACTGAAATCAACCTGCCATTTATCACAGCTGATGCATCAGGTGCAAAACATCTGAACATAACTCTCACCAGATCAAAATTTGAGAGTTTGGTGAACCACTTGATTGAGAGGACCAGGGGCCCATGTAAGAGCTGTCTGAAGGACGCAGGAATATCCACCAAGGAGGTGGATGAAGTTCTTCTTGTAGGTGGGATGACTCGGGTTCCTAAAGTACAAGAAGTGGTGTCTGAGATCTTTGGAAAGAGCCCCAGCAAAGGAGTAAATCCTGATGAGGCTGTTGCCATGGGTGCTGCTATTCAGGGAGGCATTCTTCGTGGAGATGTGAAAGAGTTGCTTCTCTTGGATGTCACTCCCCTATCCCTTGGTATAGAGACACTGGGTGGCATCTTCACCAGGCTGATCAACAGGAACACAACAATTCCCACTAAGAAGAGTCAGGTGTTCTCAACAGCAGCTGACAATCAAACTCAGGTTGGTATCAAGGTACTGCAAGGTGAGCGAGAGATGGCATCTGATAACAAGCTCCTTGGTGAGTTTGAGCTTATGGGCATCCCACCAGCTCCCAGAGGCATGCCTCAGATCGAAGTCACATTTGATATTGACGCTAATGGAATTGTCACTGTGTCTGCCAAAGACAAGGCCACAGGGAAGGAACAACAAATCACGATCCGCTCATCTGGTGGCCTTTCAGAAGATGAGATTGAGAAGATGGTTAAGGAAGCCGAGTTGCATGCCCAGAAAGATCAGGAGAGAAAAGCTCTGATAGATATCAGAAACAGTGCAGACACCACCATCTACAGTGCAATGTCAGGTTCTCAGGGTGGTGATCAGGCTCCCGAGGCAGAATATGAAGAGGTGAAGAAGTAG 1842 46.15 MAASVLLRSLRRRELASPSLSAYRALTGNTKSSWNTSPTGWASLARAFSSKPAGNDVIGIDLGTTNSCVAVMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFILTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRISGLDVQRIINEPTAAALSYGLNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFESLVNHLIERTRGPCKSCLKDAGISTKEVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKLLGEFELMGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQKDQERKALIDIRNSADTTIYSAMSGSQGGDQAPEAEYEEVKK* 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10899747 10904643 + Vvi3g863 Vvi3g863 784538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g863 613 ProSitePatterns Heat shock hsp70 proteins family signature 2. 243 256 IPR018181 -
Vvi3g863 613 ProSitePatterns Heat shock hsp70 proteins family signature 3. 384 398 IPR018181 -
Vvi3g863 613 Gene3D Actin; Chain A, domain 4 276 363 - -
Vvi3g863 613 Gene3D - 58 424 - -
Vvi3g863 613 Pfam Hsp70 protein 57 611 IPR013126 GO:0005524|GO:0140662
Vvi3g863 613 SUPERFAMILY Actin-like ATPase domain 57 237 IPR043129 -
Vvi3g863 613 ProSitePatterns Heat shock hsp70 proteins family signature 1. 60 67 IPR018181 -
Vvi3g863 613 Hamap Chaperone protein DnaK [dnaK]. 54 611 IPR012725 GO:0005524|GO:0006457|GO:0051082
Vvi3g863 613 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 425 602 IPR029047 -
Vvi3g863 613 PANTHER HEAT SHOCK 70 KDA PROTEIN, MITOCHONDRIAL 36 593 - -
Vvi3g863 613 SUPERFAMILY Actin-like ATPase domain 238 429 IPR043129 -
Vvi3g863 613 TIGRFAM prok_dnaK: chaperone protein DnaK 57 611 IPR012725 GO:0005524|GO:0006457|GO:0051082
Vvi3g863 613 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 431 587 IPR029047 -
Vvi3g863 613 MobiDBLite consensus disorder prediction 591 613 - -
Vvi3g863 613 PRINTS 70kDa heat shock protein signature 56 69 - -
Vvi3g863 613 PRINTS 70kDa heat shock protein signature 84 96 - -
Vvi3g863 613 PRINTS 70kDa heat shock protein signature 107 115 - -
Vvi3g863 613 PRINTS 70kDa heat shock protein signature 191 211 - -
Vvi3g863 613 PRINTS 70kDa heat shock protein signature 249 259 - -
Vvi3g863 613 PRINTS 70kDa heat shock protein signature 381 397 - -
Vvi3g863 613 PRINTS 70kDa heat shock protein signature 412 432 - -
Vvi3g863 613 PRINTS 70kDa heat shock protein signature 435 454 - -
Vvi3g863 613 PRINTS 70kDa heat shock protein signature 516 532 - -
Vvi3g863 613 CDD HSPA9-like_NBD 54 429 - -
Vvi3g863 613 PANTHER HEAT SHOCK PROTEIN 70KDA 36 593 IPR013126 GO:0005524|GO:0140662
Vvi3g863 613 Coils Coil 299 326 - -
Vvi3g863 613 Gene3D - 233 413 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g863 K04043 - vvi:100250929 1126.31