Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g866 ATGGGTAGTAAGAAAAGGGGTTTAGAATCCATAGAGGAAGCAGAGGATGAGGGGCCTATTGATAAAGTTGAATCTGAGCAATCAAAGAAAAAATTGAAAAAGGAGAAGAAGAAAGATGGGGAAAATGCAAGTGCAGCTTCTGTCAAACCAATGGAGAGAAGGAAGAAAAGGAAAGCATTGGACAAAGAGAGGCATGGGGTTTCTTCTGAAAATCATGAATCAAAGCCAGTGCAAACAGGTTCGGAATTGAAAGATGCTGATGATATCAAGGAGCAGCCAGCTTCTTCACCCAGCAGTGGTTTGCCAGAATTCCATATTACTGTTTTTAAAGACTTGGTATCGATCAATGCTTCAGTAAGAGAAGCGGCAGTAGAAACGATGGTGATGGAGTTGCAGGAAGTTCAAAAGGTGTATGATAAGCTTGGGAAAAAGGAGCTGGTTGAGCGTGGGCTGCAATTGGAAGCTGAAAAGGATGATGGTCTTAACAACTGTGCTCCTTCTTTGAGATATGCTGTTCGTAGGCTTATCCGTGGGGTCTCATCCTCAAGAGAGTGTGCAAGACAAGGTTTTGCTCTGGGTTTGACTATCTTAGTCAATAAAATTCCCAGCATCAAAGTGCAATCATTCCTGAAACTTATAGTTGATTTGTTAGAGGTTTCTTCTTCAATGAAGGGTCAGGAAGCAAAGGATTGTCTTTTAGGTCGCTTATTTGCTTATGGTGCCCTTGTTCGATCAGGAAGACTAGTTGAAGAATGGATTTCTGATAAAAACACTCCCTACATCAAGGAATTCACTAGTCTTATTATCTCGCTTGCAGCCAAGAAGCGATACCTGCAAGAGCCAGCCGTTTCAGTTATTTTGGACTTGGTTGAAAAGTTACCTACTGAAGCCTTGTTGAGTCATGTACTTGAAGCTCCGGGAATGAATGATTGGTTTGAGGGAGCCACAGAAGTTGGAAACCCTGATGCGTTGCTCCTAGCTCTGAAAATAAGAGAAAAAAATTCTCTGGACAGCAAAATATTTGACAAACTCTTGCCAAATCCTTTCAGCCCCAGCAAGCTCTTTGCCACAAGCCACTTATCATCCCTTGTCAATTGCTTAAAGGAATCTACCTTCTGTCAACCAAGAATCCACAGTGTTTGGCCTGTTTTAGTAAATAGTCTTTTGCCTGATGTTGTATTTCAAGATGAAGATGTGGTATCTTCAAGTTCCATTAAGAAGCACAAAAGGAGTCGCAAGTGTAGCTCTTCTGAAGAAGACATTGCAAAAAACCTCCGGTGTTTCTGTGAAGTTCTTATTGAAGGATCCCTTCTTCCGTCATCTCATGACCGCAAACACTTGGCATTTGATGTTCTGCTTCTTCTCTTACCAAGGTTGCCCGCATCTTTCATCCCAATTGTTCTTTCTTACAAACTTGTCCAGTGCTTGATGGACATACTTTCTACCAAGGACACTTGGCTGCATAAAGTTGCACAGTATTTTCTTAAAGAACTATCAGATTGGAAGCACAGCAGTGGGAGATTTGATTGCATTACACGGACAAAAACTGTTAAAGATTTGATGGCAGAGTTCAAAACAGAATCTGGATGCATGTTGTTTATTCAGAACTTAACTAGCATGTTTGTGGATGAAGGTCATGCTTCGGAGGAACCTTCTGATCAGAGTCAGACAACAGATGACAATTCAGAGCTAGGTTCAGCAGAGGATAAGGAATCTGTTGGACCATCAGGAAATTCTGATTTTCTGAGAAGTTGGGTCGTAGATTCCCTCCCTAGTATCTTGAAATATCTGAAGCTGGATCCTGAAGCAAAGTTTCGGGTGCAAAAAGAGATATTGAAGTTTCTAGCTGTTCAGGGTCTATTTTCTTCATCTCTTGGCACTGAAGTGACATCATTTGAATTACAGGAAAAATTTAGGTGGCCAAAAGCAGCCACCTCTAGTGCTCTTTGCAGGATGTGTATTGAGCAGCTCCACATACGTGAACCAATTGATCTTGGTTCTTACTTCATGCGATTTCTTAGTACATTACGCAATATTCCTTCAGTTTCACTCTTTCAGACATTGAGCAATGAGGATGAGAAGGCATTCACTAAATTGCAAGCTATGGAAAGTAGGCTTTGTAGAGAGGAAAGAAACTTGAGGCTCAGTGCAACAGCAAATAAACTGCATGCTCTCAGGTACTTGCTCATCCAGTTGCTGCTGCAAGTACTCCTTCGACCTGGGGAATTCTCTGAAGCTGCCTCTGAACTTATTCTATGTTGTAAGAAAGCCTTCTCTTCTTCTGATCTCCTTGAATCCTCTGGTGAAGATGAGTTAGATGGTGATGAAACACCTGAGTTAATGAATGTCCTTGTGGATACATTACTCTCATTGTTGCCAGAGTCATCAGCTCCAATGCGGTCTGCCATTGAGCAGGTTTTCAAATATTTCTGTGATGATGTCACGGATGATGGACTGCTTCGGATGTTGCGTGTCATTAAGAAAGACCTAAAACCTGCTAGACATCAGGATGCAGAGAGTGAAGATGATAGTGATGATGATGATGATTTTCTTGATATTGAAGAAGCTGAGGAAATTGATGAAGCTGAGACAGGTGAAACTGGTGAGAGTGATGAGCAAACGGATGACTCTGAGGCAGTGGTTGGAGTAGAGGCAGTTGAAGAAATTCCTGAAGCTTCTGATGATTCTGATGGGGGAATGGATGATGATGCAATGTTCCGAATGGATACTTATCTAGCAAGGATTTTCAAAGAGCGCAAGAACCAAGCTGGGGGTGAGACAGCTCATTCACAACTTGTGCTCTTCAAACTTCGAGTCCTTTCCTTGCTGGAAATTTACCTGCATGAAAATCCAGGTAAACCCCAGGTTTTGTCAGTGTACTCAAACTTGGCTCAGGCATTTGTTAAGCCACACACTGCAGAAGGTAGCGAGCAGCTTGGACAGCGCATATGGGGAATTCTGCAGAAGAAAATTTTCAAAGCAAAGGAATATCCAAAGGGTGAAGCTGTGCAACTTTCTACACTTGAATCTCTGCTGGAAAAAAACTTGAAGTGGGCTTCAAAACCATTTAAGAAGAAGAGATCTTCTGAAAATCCGTCCAAGAAGAAACAGTCAGCTTCCAGGAACCGTCATAAAATGATTGGTTCTCTTGCTCAGAATTCAATATTTTGGATTTTGAAGATCCTTGATGCAAGAAAGTTCCCAGAGTCTGAACTGCAGGGGTTTTTTGATATTTTCAAGCGTGTTCTAGTGGGGTATCTTGATAGTAAAAAGATTCAAATTAAATCCAATTTTTTAAAAGAAATATTTAGAAGACGACCATGGATTGGGCATCATCTCTTAGGCTTCCTTTTGGAGAAATGTGGCAATGCAGAATCAGAGTTCCGGCGAGTTGAAGCTCTTGATCTGGTGATTGAAATATTGAAGTCACATGTGTTTTTTAACACTGGTGTAAAAGGTCAGGAGGCATCAAAGAAAATGTTGAAAAGCCATCTGCCTAAACTTGGCCTTCTAATAAAGGTGTTAGTAACAAATATGCCAGAAAAGCAGGCAAGGCGTACTCATGTGCGGAAATTCTGTGGCAAGGTCTTCCAGATGATATCAACCTCTAACCTGACCAAGTCTTTTCTCAAAGATTTGCCACCTGATGCTCATGTTGCTTGTGAAACCCACCTTGGTGAGGCTTTTCTTGCTTTGAAGAAGCTGGGACGCTAG 3714 41.65 MGSKKRGLESIEEAEDEGPIDKVESEQSKKKLKKEKKKDGENASAASVKPMERRKKRKALDKERHGVSSENHESKPVQTGSELKDADDIKEQPASSPSSGLPEFHITVFKDLVSINASVREAAVETMVMELQEVQKVYDKLGKKELVERGLQLEAEKDDGLNNCAPSLRYAVRRLIRGVSSSRECARQGFALGLTILVNKIPSIKVQSFLKLIVDLLEVSSSMKGQEAKDCLLGRLFAYGALVRSGRLVEEWISDKNTPYIKEFTSLIISLAAKKRYLQEPAVSVILDLVEKLPTEALLSHVLEAPGMNDWFEGATEVGNPDALLLALKIREKNSLDSKIFDKLLPNPFSPSKLFATSHLSSLVNCLKESTFCQPRIHSVWPVLVNSLLPDVVFQDEDVVSSSSIKKHKRSRKCSSSEEDIAKNLRCFCEVLIEGSLLPSSHDRKHLAFDVLLLLLPRLPASFIPIVLSYKLVQCLMDILSTKDTWLHKVAQYFLKELSDWKHSSGRFDCITRTKTVKDLMAEFKTESGCMLFIQNLTSMFVDEGHASEEPSDQSQTTDDNSELGSAEDKESVGPSGNSDFLRSWVVDSLPSILKYLKLDPEAKFRVQKEILKFLAVQGLFSSSLGTEVTSFELQEKFRWPKAATSSALCRMCIEQLHIREPIDLGSYFMRFLSTLRNIPSVSLFQTLSNEDEKAFTKLQAMESRLCREERNLRLSATANKLHALRYLLIQLLLQVLLRPGEFSEAASELILCCKKAFSSSDLLESSGEDELDGDETPELMNVLVDTLLSLLPESSAPMRSAIEQVFKYFCDDVTDDGLLRMLRVIKKDLKPARHQDAESEDDSDDDDDFLDIEEAEEIDEAETGETGESDEQTDDSEAVVGVEAVEEIPEASDDSDGGMDDDAMFRMDTYLARIFKERKNQAGGETAHSQLVLFKLRVLSLLEIYLHENPGKPQVLSVYSNLAQAFVKPHTAEGSEQLGQRIWGILQKKIFKAKEYPKGEAVQLSTLESLLEKNLKWASKPFKKKRSSENPSKKKQSASRNRHKMIGSLAQNSIFWILKILDARKFPESELQGFFDIFKRVLVGYLDSKKIQIKSNFLKEIFRRRPWIGHHLLGFLLEKCGNAESEFRRVEALDLVIEILKSHVFFNTGVKGQEASKKMLKSHLPKLGLLIKVLVTNMPEKQARRTHVRKFCGKVFQMISTSNLTKSFLKDLPPDAHVACETHLGEAFLALKKLGR* 1238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10920624 10933095 + Vvi3g866 Vvi3g866 784541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g866 1237 MobiDBLite consensus disorder prediction 1 101 - -
Vvi3g866 1237 Coils Coil 1232 1237 - -
Vvi3g866 1237 MobiDBLite consensus disorder prediction 857 879 - -
Vvi3g866 1237 MobiDBLite consensus disorder prediction 1023 1037 - -
Vvi3g866 1237 SUPERFAMILY ARM repeat 166 1198 IPR016024 -
Vvi3g866 1237 MobiDBLite consensus disorder prediction 21 91 - -
Vvi3g866 1237 MobiDBLite consensus disorder prediction 545 577 - -
Vvi3g866 1237 PANTHER MYB-BINDING PROTEIN 1A FAMILY MEMBER 91 1234 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Vvi3g866 1237 Pfam DNA polymerase phi 170 947 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Vvi3g866 1237 MobiDBLite consensus disorder prediction 1022 1043 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g866 K02331 POL5, MYBBP1A; DNA polymerase phi [EC:2.7.7.7] - vvi:100268096 2229.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g866 . . . . . Bpe12g00719 . . Cmo19g00510 . . . . . . . Cpe15g00390 . . . . . . . . . . . . . . . . . . . Csa07g00644 . Cme01g00159 . Blo13g00201 Bda15g00482 . . . . Bma08g00031 . . . . . . Car19g00369 . . . . . . . . . Cla09g01618 Cam09g1534 Cec09g1780 Cco09g1863 . . Cre01g0781 . . Chy01g00167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007466 1 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35