Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g868 ATGACAGATCATCAGGTCTGTACCCGGGCATCAGGAGAACCCACATTCACCGTCGGATTTGCGGTCGTGATCCAATCGACGGATGAAACGCTGCCCAAAGTCTTTGCGGGCGGAGGAGGATTCATGGGAAAATTCCATTCTTCAAACCCTAACCCTAACAATTCGAAGCGGAAAACCCACGCGCCGGCAGGTGATATCAACGATTTATCGCCTGCTGTGACGCAATCGGCATCGGATGACGCTTCTTCCTTCAATCAGAGATCGATTGTTGAGTTCAATCGGGGTAGATACGTGACCTTCAACATCGGCTCGTATTCGAGAAAAGATTTGGTGCAACTCAAGAATCGGTTGGTATCGGAACTCGAGAAGATCCAGAATCTGAGTAATCGGATCGAGTCCGGCGATTTGCAGCTCAGATCTGGCGGCGATCGGACAGCAAACAAGCAGCAGCGGCCGAATAACAAGAAGATAGCGGGAAACAAACGGCCTCCGCCTTTTGATTCCGGAAGAGGTCCAAAGCGATCGGCAGCGGAGAACGCGAGCTTGATGAAGCTGTGCGGACAAACGTTGACGAAGCTGATGAAGCACAAGCACAGTTGGGTGTTCAATTCGCCTGTTGATGTTGTTGGCATGGGGCTTCACGATTACCACCAGATTATTAAAAGGCCGATGGATCTTGGCACCGTAAAATCGAAGATCGCGAAGAATCTCTATGATTCGCCCCTTGATTTCGCCGCGGATGTCAGATTGACATTCGACAATGCTCTGTTGTATAACCCTAAGGGCCACGATGTTCACGTCATGGCCGAGCAGTTGCTGGCTAGGTTTGAGGATTTGTTCAAACCAGTGTACAATAAGCTAGAAGAAGATGAGAGGGATCAGGAAAGAATCATCGTTGGTGAATTGCAGGGGAGTTCTTGGAACCATATTCCGACCCCAGAGAGGTTGAAGAAGCCAAGTCCGAAGCCTGTTGCGAAAAAACCTGAGAGAATGCAGGTACCTATACCCGCCACTGGGTCCTCAAACCCACCTTCGGTTCAGTCGGTGCCAACGCCATCGCCTATGCGAGCCCCACCAGTGAAGCCATTGGCCACAAGGCCAAGCAGTGGGAAGCAACCGAAGCCCAAGGCCAAGGATCCTAACAAAAGAGAGATGAGCTTAGAGGAGAAGCATAAATTGGGTCTTGGGTTGCAGAGTTTGCCTCAGGAGAAGATGGACCAGGTTGTGCAGATTATAAGCAAGAAAAATGGCCATTTAACGCAAGATGGCGATGAAATTGAGCTTGATATCGAGGCTGTTGATACCGAGACTCTTTGGGAGCTTGATAGATTAGTGACTAATTGGAAGAAAATGGTGAGCAAGATCAAGCGGCAAGCCCTTATGGTCAACAACAACACGGCTGCCACAGAAGTAAATAGGTCTTCTATGAATGAGAGAACTGAACCTTCTCTGGCTCCGGCCATGGCAAAGAAGCCAAAGAAAGGAGAGGCTGGGGAGGAAGATGTCGACATTGGTGATGAAATACCAACAGCCACCTTCCCACCAGTTGAAATTGAGAAGGATGATGCCCGGGCCAGCAGTAGTTCTAGCAGTTCGAGTAGTTCAAGCAGTGATTCCTCCTCATCGAGTGATTCGGATTCGGGGAGTTCCTCTGGGAGTGATTCGGATGTGGACAATGCTCAATCTAGACCTTGA 1695 49.68 MTDHQVCTRASGEPTFTVGFAVVIQSTDETLPKVFAGGGGFMGKFHSSNPNPNNSKRKTHAPAGDINDLSPAVTQSASDDASSFNQRSIVEFNRGRYVTFNIGSYSRKDLVQLKNRLVSELEKIQNLSNRIESGDLQLRSGGDRTANKQQRPNNKKIAGNKRPPPFDSGRGPKRSAAENASLMKLCGQTLTKLMKHKHSWVFNSPVDVVGMGLHDYHQIIKRPMDLGTVKSKIAKNLYDSPLDFAADVRLTFDNALLYNPKGHDVHVMAEQLLARFEDLFKPVYNKLEEDERDQERIIVGELQGSSWNHIPTPERLKKPSPKPVAKKPERMQVPIPATGSSNPPSVQSVPTPSPMRAPPVKPLATRPSSGKQPKPKAKDPNKREMSLEEKHKLGLGLQSLPQEKMDQVVQIISKKNGHLTQDGDEIELDIEAVDTETLWELDRLVTNWKKMVSKIKRQALMVNNNTAATEVNRSSMNERTEPSLAPAMAKKPKKGEAGEEDVDIGDEIPTATFPPVEIEKDDARASSSSSSSSSSSSDSSSSSDSDSGSSSGSDSDVDNAQSRP* 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10961389 10963812 - Vvi3g868 Vvi3g868 784543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g868 564 MobiDBLite consensus disorder prediction 372 387 - -
Vvi3g868 564 CDD Bromo_plant1 182 277 IPR037377 -
Vvi3g868 564 Pfam Bromodomain extra-terminal - transcription regulation 384 446 IPR027353 -
Vvi3g868 564 MobiDBLite consensus disorder prediction 45 84 - -
Vvi3g868 564 Pfam Bromodomain 186 270 IPR001487 GO:0005515
Vvi3g868 564 PANTHER TRANSCRIPTION FACTOR GTE2 41 562 - -
Vvi3g868 564 Coils Coil 107 130 - -
Vvi3g868 564 ProSiteProfiles NET domain profile. 375 456 IPR027353 -
Vvi3g868 564 MobiDBLite consensus disorder prediction 347 361 - -
Vvi3g868 564 MobiDBLite consensus disorder prediction 69 84 - -
Vvi3g868 564 SUPERFAMILY Bromodomain 175 291 IPR036427 GO:0005515
Vvi3g868 564 MobiDBLite consensus disorder prediction 135 156 - -
Vvi3g868 564 MobiDBLite consensus disorder prediction 308 387 - -
Vvi3g868 564 MobiDBLite consensus disorder prediction 466 564 - -
Vvi3g868 564 Gene3D - 378 455 IPR038336 -
Vvi3g868 564 MobiDBLite consensus disorder prediction 466 481 - -
Vvi3g868 564 MobiDBLite consensus disorder prediction 135 174 - -
Vvi3g868 564 MobiDBLite consensus disorder prediction 525 564 - -
Vvi3g868 564 ProSiteProfiles Bromodomain profile. 194 266 IPR001487 GO:0005515
Vvi3g868 564 PRINTS Bromodomain signature 197 210 IPR001487 GO:0005515
Vvi3g868 564 PRINTS Bromodomain signature 213 229 IPR001487 GO:0005515
Vvi3g868 564 PRINTS Bromodomain signature 229 247 IPR001487 GO:0005515
Vvi3g868 564 PRINTS Bromodomain signature 247 266 IPR001487 GO:0005515
Vvi3g868 564 PANTHER OSJNBA0053K19.4 PROTEIN 41 562 - -
Vvi3g868 564 SMART bromo_6 175 285 IPR001487 GO:0005515
Vvi3g868 564 MobiDBLite consensus disorder prediction 46 60 - -
Vvi3g868 564 Gene3D - 142 298 IPR036427 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g868 - - - vvi:100245782 971.074
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80