Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g871 ATGGACAGTGGTGCAGGTCCAAGTCTGTTTCCATTGCATCGTTGCAAAACTCTTCACCTGGTGAGGCATGCACAAGGGATCCACAATGTAGATGGAGATAAGAATTACAAAGCCTACTTGTCTCCTGCATTTTTTGATGCACAACTTACTCACCTAGGTTGGCAGCAGGTTGATAATCTGCGTAAACATGTTCATGCATGTGGGCTTGCTAAGAGGATTGAATTAGTTATTACATCTCCTTTGTTGAGGACCATGCAGACAGCTGTTGGAGTATTTGGTGGTGAGGGCTACAAAGATAGGATGGATGTGCTGCCACTGATGGTGGCAAATGCAGGGGAATGTAACCGATCTGCAATTTCAAGTTTGGACTCCCCCCCATTCCTTGCAGTAGAACTTTGTCGCGAACATTTGGGAGTTCATCCTTGTGATAAGAGGAGAAGCATCAGCGACTATCAGTTTCTTTTCCCTGCCATTGATTTTTCACTGGCAAAAAGTGACGAGGACATATTGTGGAAGGCCAATGTTAGAGAAACCAATGAAGAAGTTGCGGCTAGGGGATTGAAGTTCATGAATTGGTTGTGGACACGGAAAGAAAAGGAAATAGCAATTGTCACCCATAGTGGATTCTTGTTTCATACACTAAATGCATTTGGAAATGACTGTCACCCTCTGGTGAAAACCGAAATATGCAAGCACTTTGCAAATTGTGAACTCCGATCGATGATCATTGTGGACAGAAGTATGGCAGGGTCAGATTCATCAACAACTAATTATCCCGGAAAAATTCCTCCTGGGCTTGACCTCCCTAGTGATATTGCTGATGGAAAGCTTGAAAACGAAGCACGTAATTCTGGATTGACATAG 864 43.63 MDSGAGPSLFPLHRCKTLHLVRHAQGIHNVDGDKNYKAYLSPAFFDAQLTHLGWQQVDNLRKHVHACGLAKRIELVITSPLLRTMQTAVGVFGGEGYKDRMDVLPLMVANAGECNRSAISSLDSPPFLAVELCREHLGVHPCDKRRSISDYQFLFPAIDFSLAKSDEDILWKANVRETNEEVAARGLKFMNWLWTRKEKEIAIVTHSGFLFHTLNAFGNDCHPLVKTEICKHFANCELRSMIIVDRSMAGSDSSTTNYPGKIPPGLDLPSDIADGKLENEARNSGLT* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11144132 11163077 - Vvi3g871 Vvi3g871 784546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g871 287 PANTHER PHOSPHOGLYCERATE MUTASE-LIKE PROTEIN 1 1 280 - -
Vvi3g871 287 SMART PGAM_5 17 213 IPR013078 -
Vvi3g871 287 CDD HP_PGM_like 17 88 IPR013078 -
Vvi3g871 287 MobiDBLite consensus disorder prediction 249 287 - -
Vvi3g871 287 Pfam Histidine phosphatase superfamily (branch 1) 18 91 IPR013078 -
Vvi3g871 287 SUPERFAMILY Phosphoglycerate mutase-like 16 219 IPR029033 -
Vvi3g871 287 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 1 280 - -
Vvi3g871 287 Gene3D - 12 260 IPR029033 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g871 - - - vvi:100257829 590.497
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g871 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00934 . . Cco10g0952 Clacu10g0980 Cmu10g1765 Cre10g1138 Cone12ag1013 Cone8ag1040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g02229
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000410 2 5 1 2 2 0 4 4 2 4 2 4 4 4 4 4 4 4 3 4 4 3 3 3 3 2 5 16 9 2 113