Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g872 ATGGAGTTGAGTAACATCAAAGATGCATTTGATCGTGTTGCCAAGAAGCAAAAATTATCATCATCCAAATCCCAAGAAGTAATTGACCAAGTTGGCCGTGAAATTGAAGATGCACTGGCAAAACTCCAGGCTGACCCTGCCTCTCCTGTGGATCAGAAATCCATCCTCATGGAGCTTAAAACCAAACTTAGCATAATTGGCTCACAAAGCCAGTTGGAAGGGTCACAGAAGGAGCTCAACATGAACCTTAGCAAGTACCCCAGACTCCTTGAGAAATCCTTCAATCCTGACATATCTAAGGCATACAGAAATGTTGACTTTGATTTCCATACAGTGAATCAGATCATTGCAAGCCATTTTTACCGACAAGGATTGTTTGATATTGGGGAGTGCTTGATAAATGAGGCTGGAGAACCAGAGGACACCGCCCTAAAATCTCAATTTCTGGAAATGTTTCAAATACTTGATGCTATGAAAGCTAGGGACCTCGAGCCTGCTCTGAACTGGGTGTCCAATAATCGGGAAAAACTAAAGCAGAATGGTTCAAATCTTGAGCTGAAGCTTCACAGGCTGCAGTTTGTGGAAATTTTGCAGAAAGGAGGGCGAGCTGATGCACTCAACTACGCTAGAACTTACCTTGCTCCTTTTGCATCACTTCACATGGATGAGATCCAGAAGCTTATGGCTTGCCTCTTATGGGTAGGAAGGCTTGACAGCTCCCCATATTCCGAGTTAATGGTTCCATCCCTTTGGGAGAAATTGGCTGAGGAGCTGACCCGCCAATTCTGCAGTCTCTTGGGGCAGTCTTATGAGAGTCCATTGAGTGTGGCAATAGCTGCTGGGATTGAAGGCTTGCCTACTCTCTTGAAGCTGGCAAATGTAATGGCTGCAAAGAAGCAGGAGTGGCAGGCAATGAAACAGTTGCCAGTACCAGTGGATTTGGGTAGGGAATTCCAGTTCCACTCTATATTCGTCTGCCCAGTGAGTAGAGATCAAGGCAGTGAAGAGAACCCACCTATGCTGATGCCGTGCGGCCATGTTCTCTGTAAGCAATCAATCATGAAGCTGTCCAAGAGCAGCACCCGCATGTTTAAGTGTCCATACTGTCCGAATGAGTCTACTGTTGGGCAGTGCATGCAACTCTACTTCTGA 1152 45.83 MELSNIKDAFDRVAKKQKLSSSKSQEVIDQVGREIEDALAKLQADPASPVDQKSILMELKTKLSIIGSQSQLEGSQKELNMNLSKYPRLLEKSFNPDISKAYRNVDFDFHTVNQIIASHFYRQGLFDIGECLINEAGEPEDTALKSQFLEMFQILDAMKARDLEPALNWVSNNREKLKQNGSNLELKLHRLQFVEILQKGGRADALNYARTYLAPFASLHMDEIQKLMACLLWVGRLDSSPYSELMVPSLWEKLAEELTRQFCSLLGQSYESPLSVAIAAGIEGLPTLLKLANVMAAKKQEWQAMKQLPVPVDLGREFQFHSIFVCPVSRDQGSEENPPMLMPCGHVLCKQSIMKLSKSSTRMFKCPYCPNESTVGQCMQLYF* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11175986 11177138 - Vvi3g872 Vvi3g872 784547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g872 383 SUPERFAMILY RING/U-box 320 378 - -
Vvi3g872 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 382 IPR013083 -
Vvi3g872 383 SMART toby_final6 200 294 IPR013144 -
Vvi3g872 383 ProSiteProfiles Gid-type RING finger profile. 326 369 IPR044063 GO:0061630
Vvi3g872 383 CDD dRing_Rmd5p_like 324 372 IPR037683 -
Vvi3g872 383 Pfam CTLH/CRA C-terminal to LisH motif domain 147 288 IPR024964 -
Vvi3g872 383 Pfam RING-type zinc-finger 326 367 IPR027370 -
Vvi3g872 383 SMART ctlh 147 204 IPR006595 -
Vvi3g872 383 ProSiteProfiles Zinc finger RING-type profile. 326 369 IPR001841 -
Vvi3g872 383 ProSiteProfiles LIS1 homology (LisH) motif profile. 110 140 IPR006594 GO:0005515
Vvi3g872 383 PANTHER MACROPHAGE ERYTHROBLAST ATTACHER-RELATED 1 383 IPR045098 GO:0004842|GO:0043161
Vvi3g872 383 PANTHER PROTEIN RMD5 HOMOLOG 1 383 - -
Vvi3g872 383 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 147 204 IPR006595 -
Vvi3g872 383 SMART ring_2 326 369 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g872 K23333 RMND5; E3 ubiquitin-protein transferase RMND5 [EC:2.3.2.27] - vvi:100252683 758.444
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g872 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1066 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006062 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 38