Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g874 ATGATTGTAGAGGATCTTGGAATTGAAGCCAAGGAAGCGGCAGTTCGTGAGGTTGCCAAACTTTTGCCACTACCTGAACTTTTGCAGTCAATTTCATCAATTAAGGCTGATTACATTACACGCCAACAGGCAAATGATGCACAACTTAGTACGATGGTTGCAGAGCAGGTTGAACAGGCACAGGCTGGGTTGGAATCAATTTCCTCATCTCAAAAGACAATAAACCAGCTTCGTGAGAACTTTCTCTCTATTGAGAGGCTATGTCAAGAGTGCCAAAACTTAATTGAAAATCATGACCAAATAAAGCTCCTTAGCAATGTGAGGAATAACTTAAATACCACACTGAAGGACGTGGAAGGCATGATGTCAATTTCTGTTGAAGCATCCGAGGCTCGGGATTCTTTGAGTGATGATAAAGAACTCATCAACACGTATGAGAGGTTGACAGCTCTGGATGGAAAACGGAGGTTTGCTTTAGCAGCTGCAGCATCTCACAAGGAAGAAGTTGGCAGACTGAGGGAATATTTTGAAGATGTAGATCGAACCTGGGAGACATTTGAGAAGACGTTATGGGGTCATATTTCAAACTTCTATAAACTTTCTAAAGAAAGTCCACAAACTCTGGTTCGTGCTTTGAGGGTTGTTGAAATGCAAGAAATCCTTGATCAACAACTTGCTGAGGAAGCAGCCGAGGCTGAGGGAGGAGGGACCATGGCATCAATTGCAAATCCTCGTAGAACTGCAAAAAAATCTACAACTGCAACAGCTTCTTCGAGGAACTTGACACAACAGAAGTTGAAGATCCAAGGGAAAGACTATAAGGATAAGTGTTATGAGCAAATAAGGAAGACAGTTGAGCAAAGGTTTAATAAGCTTTTGACAGAGCTTGTTTTTGAGGATCTAAAAGCTGCTTTGGAGGAAGCTAGAATGATTGGAGAAGAGCTTGGAGATATTTATGACTATGTGGCTCCTTGTTTTCCCCCAAGATATGAAATATTCCAACTGATGGTAAATCTTTATACTGAGAGGTTCATTCAGATGCTCAGGCTGCTCAGTGACCGAGCAAATCAACTGACAAATATAGAGATTTTAAAGGTAACTGGTTGGGTTGTTGAATACCAAGATAATCTAATTGGGCTTGGTGTTGATGATTCTTTAGCTCAAGTTTGTTCTGAGAGTGGTGCTATGGATCCTCTCATGAATTCATATGTTGAAAGAATGCAAGCCACAACAAAGAAATGGTATTTAAATATCCTGGAGGCTGATAAAGTACAACCGCCAAAGAAAACAGAAGATGGAAAGCTATATACACCAGCTGCTGTTGACTTATTTAGGATCCTAGGAGAGCAGGTGCAAATTGTTCGGGAGAATAGCACTGATGTCATGCTATACAGAATTGCTTTGGCTGTCATTCAGGTAATGATTGATTTTCAAGCAGCTGAAAAGCGAAGACTTGAAGAACCTGCTTCTGAAATTGGTCTGGAATCTTTATGTGCAATGATTAACAACAATCTACGCTGCTATGATCTAGCATTGGAGCTGAGTAGCAGCACCTTGGAAGCTCTTCCACAGAATTATGCTGAGCAGGTTAATTTTGAAGACACTTGCAAAGGTTTCCTGGAGGTTGCAAAGGAAGCTGTGCATCAAACTGTGAGTGTTATATTTGAAGACCCAGGAGTTCAAGAGTTACTTGTCAAGCTGTACCAGAAAGAGTGGTGCGAAGGACAGGTTACAGAGTACTTGGTTGCAACATTTGGTGATTATTTTATGGATGTGAAGATGTACATTGAAGAAAGATCATTTAGGAGATTTGTTGAAGCTTGCCTGGAAGAAACTGTGGTTGTTTATGTTGATCACCTCCTGACACAGAGAAACTATATAAAGGAAGAAACCATTGAACGGATGAGGCTAGATGAAGAGGTTATCTTGGATTTCTTTAGGGAGTACATAAGTGTCTCCAAAGTTGAAAACAGAGTCAGGATACTGAGTGACTTGAGAGAGCTTGCTTCCGCAGAGAGCCTGGATACTTTCACACTCATCTACACAAACATTCTTGAACATCAACCCGATTGTCCATCTGAGGTGGTTGAGAAACTAGTTGGACTGCGAGAAGGCATACCACGGAAGGATGCAAAGGAGGTTGTCCAAGAGTGCAAAGAAATCTACGAAAATTCCCTTGTTGGCGGTAACCCCCCAAAGGCAGGTTTTGTTTTCCCAAAGGTGAAGTGTCTTACAGCTTCCAAGGGATCGTTATGGCGGAAGCTGACTTGA 2271 41.61 MIVEDLGIEAKEAAVREVAKLLPLPELLQSISSIKADYITRQQANDAQLSTMVAEQVEQAQAGLESISSSQKTINQLRENFLSIERLCQECQNLIENHDQIKLLSNVRNNLNTTLKDVEGMMSISVEASEARDSLSDDKELINTYERLTALDGKRRFALAAAASHKEEVGRLREYFEDVDRTWETFEKTLWGHISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGTMASIANPRRTAKKSTTATASSRNLTQQKLKIQGKDYKDKCYEQIRKTVEQRFNKLLTELVFEDLKAALEEARMIGEELGDIYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANQLTNIEILKVTGWVVEYQDNLIGLGVDDSLAQVCSESGAMDPLMNSYVERMQATTKKWYLNILEADKVQPPKKTEDGKLYTPAAVDLFRILGEQVQIVRENSTDVMLYRIALAVIQVMIDFQAAEKRRLEEPASEIGLESLCAMINNNLRCYDLALELSSSTLEALPQNYAEQVNFEDTCKGFLEVAKEAVHQTVSVIFEDPGVQELLVKLYQKEWCEGQVTEYLVATFGDYFMDVKMYIEERSFRRFVEACLEETVVVYVDHLLTQRNYIKEETIERMRLDEEVILDFFREYISVSKVENRVRILSDLRELASAESLDTFTLIYTNILEHQPDCPSEVVEKLVGLREGIPRKDAKEVVQECKEIYENSLVGGNPPKAGFVFPKVKCLTASKGSLWRKLT* 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11194240 11238920 + Vvi3g874 Vvi3g874 784549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g874 756 Pfam Exocyst complex component Sec6 176 736 IPR010326 GO:0000145|GO:0006887
Vvi3g874 756 PANTHER EXOCYST COMPLEX COMPONENT SEC6-RELATED 1 754 IPR010326 GO:0000145|GO:0006887
Vvi3g874 756 Gene3D - 393 562 - -
Vvi3g874 756 PANTHER BNACNNG07830D PROTEIN 1 754 - -
Vvi3g874 756 Coils Coil 84 104 - -
Vvi3g874 756 Gene3D - 568 730 IPR042532 -
Vvi3g874 756 MobiDBLite consensus disorder prediction 244 261 - -
Vvi3g874 756 MobiDBLite consensus disorder prediction 231 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g874 K06110 EXOC3, SEC6; exocyst complex component 3 - vvi:100247582 1426.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g874 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .