Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g876 ATGGGGTTGTGTAAGATTTCAGTAGCACTTGCTTGTCTCATAGGCTCGGCCCTGCTGGTTCACACCTCCTATGCTCAAAACTCACAACAAGACTACCTCAATGCTCACAATACTGCTCGGGCACAAGTTAGTGTTGGGCCTATGACATGGAACAACACCGTAGCCGCCTATGCTCAGAGCTATGCCAACAAACAGATCGGGGACTGCAATCTCGTGCATTCGAATGGGCCTTATGGGGAGAACCTTGCTAAGGGCAGTGGTTCATTTACAGGCACTGCGGCAGTGAACTTGTGGGTGGCGGAGAAGCCTAATTATGATTACAACTCCAACTCATGCGTTGGTGGGGAATGCAGGCACTATACTCAAGTTGTTTGGCGTAACTCAGTGAGTCTTGGGTGTGCTAGGGCTCAGTGCAACAATGGATGGTGGTACATCATATGTAACTACTATCCTCCGGGCAACTACATCGGACAGCGTCCTTATTGA 486 49.59 MGLCKISVALACLIGSALLVHTSYAQNSQQDYLNAHNTARAQVSVGPMTWNNTVAAYAQSYANKQIGDCNLVHSNGPYGENLAKGSGSFTGTAAVNLWVAEKPNYDYNSNSCVGGECRHYTQVVWRNSVSLGCARAQCNNGWWYIICNYYPPGNYIGQRPY* 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11275204 11275881 - Vvi3g876 Vvi3g876 784551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g876 161 Gene3D CAP 26 161 IPR035940 -
Vvi3g876 161 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Vvi3g876 161 PRINTS Allergen V5/Tpx-1 family signature 94 107 IPR001283 -
Vvi3g876 161 PRINTS Allergen V5/Tpx-1 family signature 117 133 IPR001283 -
Vvi3g876 161 PRINTS Allergen V5/Tpx-1 family signature 144 157 IPR001283 -
Vvi3g876 161 PANTHER CAP (CYSTEINE-RICH SECRETORY PROTEINS, ANTIGEN 5, AND PATHOGENESIS-RELATED 1 PROTEIN) SUPERFAMILY PROTEIN 3 161 - -
Vvi3g876 161 CDD CAP_PR-1 29 161 - -
Vvi3g876 161 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 3 161 IPR001283 -
Vvi3g876 161 ProSitePatterns CRISP family signature 2. 144 155 IPR018244 GO:0005576
Vvi3g876 161 ProSitePatterns CRISP family signature 1. 118 128 IPR018244 GO:0005576
Vvi3g876 161 SMART SCP_3 27 157 IPR014044 -
Vvi3g876 161 Pfam Cysteine-rich secretory protein family 33 149 IPR014044 -
Vvi3g876 161 SUPERFAMILY PR-1-like 26 161 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g876 K13449 PR1; pathogenesis-related protein 1 - vvi:100242451 349.747
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g876 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127