Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g879 ATGAAGGATCAGAGAGTGAAGAAGGTACCTGCATCTCTTCTGTTGATTCAACCAGGAAAAAAGAGGCCAACTGAATCTGCCACAAAAACACCTGTTCCTGCTAAAAAGGCTAAATTAGTTTCACCTCAAAACACAGATGGTAAGAAGGGTGGGGCTCATACAGCAACTCCTCATCCTAACAAGAAGGCGGGGAAAACTCCTGCTACCGGTGACAAAGGCAAGGAGCAGAGCCCAAAATCTGGTGGCCAAGTCTCTTGCAAATCTTGCAGCAAGACATTCAACTCAGAAAATGCGCTTCAATCCCATTCCAAGACTAAGCATGGTGTCTCTTAG 333 45.65 MKDQRVKKVPASLLLIQPGKKRPTESATKTPVPAKKAKLVSPQNTDGKKGGAHTATPHPNKKAGKTPATGDKGKEQSPKSGGQVSCKSCSKTFNSENALQSHSKTKHGVS* 111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11323177 11325059 + Vvi3g879 Vvi3g879 784554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g879 110 MobiDBLite consensus disorder prediction 1 110 - -
Vvi3g879 110 ProSitePatterns Zinc finger C2H2 type domain signature. 86 107 IPR013087 -
Vvi3g879 110 Pfam Zinc-finger double-stranded RNA-binding 85 106 IPR022755 -
Vvi3g879 110 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 16 106 - -
Vvi3g879 110 MobiDBLite consensus disorder prediction 76 110 - -
Vvi3g879 110 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 16 106 - -
Vvi3g879 110 Gene3D Classic Zinc Finger 73 108 - -
Vvi3g879 110 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 110 IPR013087 -
Vvi3g879 110 SUPERFAMILY beta-beta-alpha zinc fingers 78 106 IPR036236 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g879 - - - vvi:100256817 179.874
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g879 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001432 0 3 1 2 0 2 3 2 2 2 2 1 3 3 3 2 1 4 3 3 4 3 4 2 2 1 3 5 2 4 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14689 PF12171 zf-C2H2_jaz 6.20E-05 CL0361 Vvi TF