Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g88 ATGGATCCCGTTGTCATGAATATTGTTGGCCAGGATTCCCCCAGAAAGGTGGAGGAAAGCAAGGCAACTTCTTTAGAAGGAAAGGACTCTTCAAGGACAGCATTTCTCCCCTGCATTATTTCCCATGAATTCTTCTCACCAGAGGTCTGGAGAGCATCCGTTGCAGAGCTTCTTGGGACAGCAGTGCTTGTGTTTGTGCTTGACACCATAGTTATCTCCTCCTACCAAACCAAAACTGAAACACCAAACCTTGTGATATCATTCTTCATTTTCCCCACACTCACAATTCTTCTCCTTGCCACCTTTCCCATTTCTGGTGGTCACATCAACCCTATAATCACCTTCTCTGCTGCACTAGTTGGTGTGATCTCTCATTCACGGGCATGCGTCTATGTCTTGGCTCAATGTGCAGGCGCTGTGCTAGGTGCACTGGCACTCAAAGCTGTGGTAAATAGCAACATTGAAGAAACATTCTCCCTTGGAGGCTGCACCCTCAGTGTCATTGTTCCAGGCCCTGATGGGGCTATCACTGTAGGTATCAACACAGGGCAGGCTTTATGGCTTGAGATAATATGCACATTTGTGTTATTGTTTGCTTCAGTATGGATTGGATTTGATGATCGCCAAGCGAAGGCGCTGGGGCTGGTTCTGGTTTGCTCGATCATTGGAGCTGTGGCTGGGGTTCTGGTATTTGTGTCGACAACAGTTACAGCAACCAAAGGTTATGCTGGTGCTGGGATGAACCCTGCTAGATGTTTGGGGGCAGCACTGGTTAGAGGGGGTCAACTCTGGAATGGCCTCTGGGTTTTCTGGGTTGGTCCTGCTATTGCTTGCTTGCTATTCCATGTGTATGTGAAGACCATTCGAGATCTGCCACCATGGACAGAGTTCCTAAGTAAGAATGAACTGCCATGA 915 47.98 MDPVVMNIVGQDSPRKVEESKATSLEGKDSSRTAFLPCIISHEFFSPEVWRASVAELLGTAVLVFVLDTIVISSYQTKTETPNLVISFFIFPTLTILLLATFPISGGHINPIITFSAALVGVISHSRACVYVLAQCAGAVLGALALKAVVNSNIEETFSLGGCTLSVIVPGPDGAITVGINTGQALWLEIICTFVLLFASVWIGFDDRQAKALGLVLVCSIIGAVAGVLVFVSTTVTATKGYAGAGMNPARCLGAALVRGGQLWNGLWVFWVGPAIACLLFHVYVKTIRDLPPWTEFLSKNELP* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 976130 977121 - Vvi3g88 Vvi3g88 783763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g88 304 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g88 304 PRINTS Major intrinsic protein family signature 90 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g88 304 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g88 304 PRINTS Major intrinsic protein family signature 188 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g88 304 PRINTS Major intrinsic protein family signature 229 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g88 304 PRINTS Major intrinsic protein family signature 268 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g88 304 MobiDBLite consensus disorder prediction 1 25 - -
Vvi3g88 304 PANTHER AQUAPORIN-LIKE 14 296 - -
Vvi3g88 304 Pfam Major intrinsic protein 46 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g88 304 Gene3D Glycerol uptake facilitator protein. 12 293 IPR023271 -
Vvi3g88 304 PANTHER AQUAPORIN-LIKE 14 296 - -
Vvi3g88 304 SUPERFAMILY Aquaporin-like 42 287 IPR023271 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g88 - - K09866 vvi:104878514 577.4
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g88 . Blo15g00657 . . . . . . . . . Cma20g00773 . Car20g00676 . . . . . . . . . . . . . . . . . . Cone8ag1256 . Cone10ag1186 Lsi10g00459 . Chy11g00301 . . . . . . . . . Sed01g0227 . . . . . . . . Bhi10g01899 Tan05g1199 Cmetu11g1981 . Hepe08g0951 . . Cla02g01120 Cam02g1193 Cec02g1182 . Clacu02g1182 Cmu02g1142 . . Csa02g01348 . Cme11g00423
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010832 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 2 32