Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g880 ATGATTTTGTGCGGGAGTCCTCATCCTGTTTTCGATAGAAAAACATCCATCGTGAGTAAGTACATTAGTGAATTGGATGATTGCGAGAAGCTATTTATTCCAATGCATGACGAATGCCCTGGTCATTGGTATTTGTGCGTCATTGACTTCAAAAACTCTTATACCCAAATTTTGGACTCATTACGATCGAAGAATCGAGACAAGTTCCGGTTTCAGAGTGTCAAAACAGTGGCTGAATTTTGTCAAACGTTCTTCAAACTGTATGACATAGGGAAAGATGTCTTCCAATTCTCCATTGATTGGGCTCCTTCGATTCCGACCCAAGAGAATGGGTGGGACTGTGGAGTGCATGTCATTAGACATATGCAGAGATTCAAAAATGGTGATCCGATGACGAGCTCCGACTTTTGTAATTCTATGGAAATACGTCGAGAAATAGCATGTGATTTAGTTTTACACAAGGGAAATAGAGAAAAACAAACCATTGTGGCTATTGTTTGTACAAAGACGTCGACACGAGCAATGAAAAAATTATTATTATGA 543 39.23 MILCGSPHPVFDRKTSIVSKYISELDDCEKLFIPMHDECPGHWYLCVIDFKNSYTQILDSLRSKNRDKFRFQSVKTVAEFCQTFFKLYDIGKDVFQFSIDWAPSIPTQENGWDCGVHVIRHMQRFKNGDPMTSSDFCNSMEIRREIACDLVLHKGNREKQTIVAIVCTKTSTRAMKKLLL* 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11335674 11336655 - Vvi3g880 Vvi3g880 784555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g880 180 SUPERFAMILY Cysteine proteinases 19 152 IPR038765 -
Vvi3g880 180 Pfam Ulp1 protease family, C-terminal catalytic domain 25 135 IPR003653 GO:0006508|GO:0008234
Vvi3g880 180 Gene3D Adenoviral Proteinase; Chain A 11 154 - -
Vvi3g880 180 PANTHER ULP1 PROTEASE FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 35 160 - -
Vvi3g880 180 ProSiteProfiles Ubiquitin-like protease family profile. 1 125 IPR003653 GO:0006508|GO:0008234
Vvi3g880 180 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 35 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g880 - - - vvi:104878148 366.311
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g880 Vvi18g1672 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g880 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003049 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 15