Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g881 ATGAAATATAATGGACACAATATTCTGACCTGGACATCGGGAGAAATGAAGTCTAAGACTCGGATCTTGGCACCGACCTCGCCCACAATCCTGAGCTCGCGGTCCTTGAGGGAGACTTCTTTGATGAGGTCAAGACGTCGACTTGGAGGAGGTTGGCCCGGTTCACGGCGATGGTGGTCTCCACCCACCTGTGAAGACAGCACACTTCAAGAATCTTCTTTTTTTTTTTCTTTCCTCTTTCTCTTTACATATATACTGAGAAAGCCCAGCTCATCCCTCAATTCCCAGATGGGTTTTATGAATGTTCTCAAGTTCTCAGCTGCATGCTTTGATATTCTTGCCTGGCCTCTATTTGCACTGGGTTATCCTCTATGTTCTTCAATTCGGGCAATTGAGACTAACTCAATCTCAGACTTTCGGAAGTTGGTGGCGTATTGGGTTCTATTTTCCTTGATTTCACTCTATGATCATGCTTTTTCCAAGCTCCTTGAATGGGTACCATTCTGGCCTTACATAAAGCTGATGGTCATCTGCTGGCTGGTGATACCGCAGTTTGATGGTTCATATTATGTCTATCAACACCTAGTTCATCCATGCTTGTCCATGGATCCACAAGTTGTCATGAATTGGCTCTTCAATGAATCAAAAAAGAAGTTTCATAGTAGAGAAACCTTTCTTGTTTCAGCAGACCAATATACTAAGGAGAATGGACCTGAAGCTTTGGAGAAACTACTTGCTAGGAAGTTGAGGAGCACAAAGCCTAATGTTGAAGTGAAAGAGATCAAAGCACCTGCAGCACCGGAGAAAAAAGGGGAACAGTGGAAGTGTGAAGAGCCTAATGTTGCTGAAAAGGAGATCCAAGTAGTCAAAGTAACAGAGATAAAAAATGGGGGGGATGAAGCAAAGAGGTATGAATGGCCTAATGCTGCTAAGGAGGAGGTCAAAGTGACAGAAGTAACACAGAGAACATTTGGTGGTACAGCACAGTGGGTTAAACAAACAGAGATAAATCTTGGTGAAACTAGAAGTAATACAACCTGTTCTGTGGAGATAAAAGAAAGGGCAGCAGTACTGGTGGCTGCAGAAATTGAGGCATGTAGAGACGATAGAACCCCCAAGATACCTCTTCATGAGAAAGTCCAGAAAGAGTGGGCTTGTGCTGTATGCCAGTTCACAACCCAAACTGAAGCGACCTTCAATTCCCACCTTCAAGGGAAGAGACATCAGGCCATTTCTGAGCAGCTGAGAGCCAAAAACCAGGCAACCAAAACCAATTGTTCCCCATCTGCTTCAATGGCCAAGAAATCTGATCAGTCCACCAAAGAGGAGCAACCAAAGTGTACTTCCAACAATCTGAATTCCAAAAACAATGGAATCTCAGCTGCTTCAACAGTGAAGAAACTTGATGAGACCAAAGATGATGAGCAACAAAAGTCTGCATCTAGCAATGGACCAAACCAGAAGAATAACAAAAAGCAAGAGGTACAGACCAATGAGCAAGGCCATCAGAAGAACTCAAGGCAAACTGGTGATGGAATGAAAGAGTTGAGATCATGGTGCAATATCTGTAATGTAAGCTGCACAAGGGAGCTTGACCTGGCCTCTCATCTCAATGGAAGGAGGCACTTTGATAGGATAAAGCAGCTGTCTGAATTATGGTGCAGTAACTGCAATGTAAGGTGCAACAGTGAGGTTGATATGGCCTCTCACCGAAATGGGAGGAGGCACTTGGAGCAGCTGAAGGAACAGTTAGGATTATGGTGCAGTATCTGTAGTGTGAATTGTGTTAGGAGGAGCTGGAATGGGTTCAAATCAGGAATTAAGACCCAGTTCCAAGACATGGAAAGTGTCTTTAGATTATGTTAA 1866 43.84 MKYNGHNILTWTSGEMKSKTRILAPTSPTILSSRSLRETSLMRSRRRLGGGWPGSRRWWSPPTCEDSTLQESSFFFSFLFLFTYILRKPSSSLNSQMGFMNVLKFSAACFDILAWPLFALGYPLCSSIRAIETNSISDFRKLVAYWVLFSLISLYDHAFSKLLEWVPFWPYIKLMVICWLVIPQFDGSYYVYQHLVHPCLSMDPQVVMNWLFNESKKKFHSRETFLVSADQYTKENGPEALEKLLARKLRSTKPNVEVKEIKAPAAPEKKGEQWKCEEPNVAEKEIQVVKVTEIKNGGDEAKRYEWPNAAKEEVKVTEVTQRTFGGTAQWVKQTEINLGETRSNTTCSVEIKERAAVLVAAEIEACRDDRTPKIPLHEKVQKEWACAVCQFTTQTEATFNSHLQGKRHQAISEQLRAKNQATKTNCSPSASMAKKSDQSTKEEQPKCTSNNLNSKNNGISAASTVKKLDETKDDEQQKSASSNGPNQKNNKKQEVQTNEQGHQKNSRQTGDGMKELRSWCNICNVSCTRELDLASHLNGRRHFDRIKQLSELWCSNCNVRCNSEVDMASHRNGRRHLEQLKEQLGLWCSICSVNCVRRSWNGFKSGIKTQFQDMESVFRLC* 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11339789 11346406 + Vvi3g881 Vvi3g881 784556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g881 621 MobiDBLite consensus disorder prediction 417 435 - -
Vvi3g881 621 PANTHER HVA22-LIKE PROTEINS 436 549 IPR004345 -
Vvi3g881 621 PANTHER HVA22-LIKE PROTEINS 97 447 IPR004345 -
Vvi3g881 621 SUPERFAMILY beta-beta-alpha zinc fingers 365 420 IPR036236 -
Vvi3g881 621 MobiDBLite consensus disorder prediction 417 511 - -
Vvi3g881 621 Pfam Zinc-finger of C2H2 type 384 408 - -
Vvi3g881 621 Pfam Zinc-finger of C2H2 type 553 576 - -
Vvi3g881 621 Pfam Zinc-finger of C2H2 type 519 542 - -
Vvi3g881 621 Pfam TB2/DP1, HVA22 family 123 199 IPR004345 -
Vvi3g881 621 MobiDBLite consensus disorder prediction 478 507 - -
Vvi3g881 621 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 97 447 - -
Vvi3g881 621 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 436 549 - -
Vvi3g881 621 SUPERFAMILY beta-beta-alpha zinc fingers 505 549 IPR036236 -
Vvi3g881 621 Gene3D Classic Zinc Finger 487 546 - -
Vvi3g881 621 Gene3D Classic Zinc Finger 368 414 - -
Vvi3g881 621 Gene3D Classic Zinc Finger 547 584 - -
Vvi3g881 621 SUPERFAMILY beta-beta-alpha zinc fingers 550 582 IPR036236 -
Vvi3g881 621 SMART c2h2final6 552 576 IPR013087 -
Vvi3g881 621 SMART c2h2final6 384 408 IPR013087 -
Vvi3g881 621 SMART c2h2final6 518 542 IPR013087 -
Vvi3g881 621 MobiDBLite consensus disorder prediction 443 464 - -
Vvi3g881 621 SMART ZnF_U1_5 381 415 IPR003604 GO:0003676|GO:0008270
Vvi3g881 621 SMART ZnF_U1_5 515 549 IPR003604 GO:0003676|GO:0008270
Vvi3g881 621 SMART ZnF_U1_5 550 583 IPR003604 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g881 - - - vvi:100247569 1014.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g881 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6