Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g885 ATGATTTTGGAATTGTCCTTGAATCATGTGAAGTGTGAATGGTCTAATGCTGCTAAGGAGGAGGTCAAAGTGACAGAAGTAACACAGAGAACATTTGGTGGTACAGCACAGTGGGTTAAACAAACAGAGATAAATCTTGGTGAAACTAGAAGTAATACAACCTGTGCTGTGGAGATAAAAGAAAGGGCAGCAGCACTGGTGGCTGCAGAAATTGAGGCATGTAGAGACGATAGAACCCCCAAGATACCTCTTCATGAGAAAGTCCAGAAAGAGTGGGCTTGTGCTGTGTGCCAGTTCACAACCCAAACTGAAGCGACCTTCAATTCCCACCTTCAAGGGAAGAGACATCAGGCCATTTCTGAGCAGCTGAGAGCCAAAAATCAGGCAACCAAAACCAATTGTTCCCCATCTGCTTCAATGGCCAAGAAATCTGATCAGTCCACCAAAGAGGAGCAACCGAAGTGTACTTCCAATCTGAATTCCAAAAACAATGGAATCTCAGCTGCTTCAACAGTGAAGAAACTTGATGAGACCAAAGATGATGAGCAACAAAAGTCTGCATCTAGCAATGGACCGAACCAGAAGAATAACAAAAAGCAAGAGGTACAGACCAATGAGCAAGGCCGTCAGAAGAACTTAAGGCAAACTGGTGATGGAATGAAAGAGTTGAGATCATGGTGCAATATCTGTAATGTAAGCTGCACAAGGGAGCTTGACCTGGCCTCGCATCTCAATGGAAGGAGGCACTTTGATAGGATAAAGCAGCTGTCTGAATTATGGTGCAGTAACTGCAATGTAAGGTGCAACAGTGAGGTTGATATGGCCTCTCACCGAAATGGGAGGAGGCACTTGGAGCAGCTGAAGGAACGGTTAGGATTATGGTGCAGTATCTGTAGTGTGAATTGTGTTAGGAGGAGCTGGAATGGGTTCAAATCAGGAATTAAGACCCAGTTCCAAGACATGGAAAGTGTCTTTAGATTATGTTAA 987 44.28 MILELSLNHVKCEWSNAAKEEVKVTEVTQRTFGGTAQWVKQTEINLGETRSNTTCAVEIKERAAALVAAEIEACRDDRTPKIPLHEKVQKEWACAVCQFTTQTEATFNSHLQGKRHQAISEQLRAKNQATKTNCSPSASMAKKSDQSTKEEQPKCTSNLNSKNNGISAASTVKKLDETKDDEQQKSASSNGPNQKNNKKQEVQTNEQGRQKNLRQTGDGMKELRSWCNICNVSCTRELDLASHLNGRRHFDRIKQLSELWCSNCNVRCNSEVDMASHRNGRRHLEQLKERLGLWCSICSVNCVRRSWNGFKSGIKTQFQDMESVFRLC* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11422336 11424852 + Vvi3g885 Vvi3g885 784560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g885 328 MobiDBLite consensus disorder prediction 151 171 - -
Vvi3g885 328 SMART ZnF_U1_5 257 290 IPR003604 GO:0003676|GO:0008270
Vvi3g885 328 SMART ZnF_U1_5 222 256 IPR003604 GO:0003676|GO:0008270
Vvi3g885 328 SMART ZnF_U1_5 89 123 IPR003604 GO:0003676|GO:0008270
Vvi3g885 328 Pfam Zinc-finger of C2H2 type 92 116 - -
Vvi3g885 328 Pfam Zinc-finger of C2H2 type 260 283 - -
Vvi3g885 328 Pfam Zinc-finger of C2H2 type 226 249 - -
Vvi3g885 328 Gene3D Classic Zinc Finger 257 291 - -
Vvi3g885 328 Gene3D Classic Zinc Finger 75 122 - -
Vvi3g885 328 SMART c2h2final6 92 116 IPR013087 -
Vvi3g885 328 SMART c2h2final6 225 249 IPR013087 -
Vvi3g885 328 SMART c2h2final6 259 283 IPR013087 -
Vvi3g885 328 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 145 256 - -
Vvi3g885 328 PANTHER HVA22-LIKE PROTEINS 8 155 IPR004345 -
Vvi3g885 328 MobiDBLite consensus disorder prediction 125 143 - -
Vvi3g885 328 PANTHER HVA22-LIKE PROTEINS 145 256 IPR004345 -
Vvi3g885 328 SUPERFAMILY beta-beta-alpha zinc fingers 73 128 IPR036236 -
Vvi3g885 328 SUPERFAMILY beta-beta-alpha zinc fingers 215 256 IPR036236 -
Vvi3g885 328 SUPERFAMILY beta-beta-alpha zinc fingers 257 289 IPR036236 -
Vvi3g885 328 Gene3D Classic Zinc Finger 209 256 - -
Vvi3g885 328 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 8 155 - -
Vvi3g885 328 MobiDBLite consensus disorder prediction 185 214 - -
Vvi3g885 328 MobiDBLite consensus disorder prediction 125 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g885 - - - vvi:100247569 577.015
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g885 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14690 PF12874 zf-met 6.40E-07 CL0361 Vvi TF