Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g89 ATGGCAGAAGCAATTCTCTTCTGTGCCTTGGAAAGGATTGGTGACTTGCTCATTCAACAGGCAGATTTCTTGGGGAAGGTCGGCGATGATGTTCAACTGTTGCAAACTGAACTGAGGAGGATGCAGTGCTTCCTAAAAGATGCGAGTGCACGACAAGAAGAAGACCAGAAAATCCGGAACTGGGTTGCGGAAATCAGAGATGTTGCATATGATGCAGAGGATGTGGTAGAATCTTATATCCTCAAGGTTGTGTTTAGGAGGGGAAGATCCATCCATACTATCGGCAACATGCTTGCTACTTGGGAGGTTGGATCAGAGATTGAAGATATCAAAGCCAAGATCTCCAACCTCACCAGGAGTTTAGAAACTTATGGGATAAGGCCTATAAGAGAAGGTGATGATTCGAGATTTGCATATGAAGGTCGACAACAGCTGAGGCGAACTTATTCTCACCTTGTTGAGGATGATGTGGTTGGATTAGAAGACAAGACAAAAGAATTGGTGACACTTTTGGTGAAAGAAGAGAGGTATCAAGTTATTTCTATTTGTGGTATGGGTGGTTTGGGGAAAACCACTCTTGCTAGGAAGAGGAAGTTATATCAAATCCAATGGGAGAAGAAATGCTTGGTGATACTTGATGACCTTTGGACCATGCAAGCTTGGAACAGTCTAAGACCCGCCTTCCCAATTGGAAAATCGAGAAGCAAAATATTGCTTACCACTCGCAACAAGGACGTGGCTACCTATGTAGATCCTAAAGCCCTTATCCATGAAGTTCAGTGTCTAACTGAAGAAATGAGTTGGGAGCTGCTACAGAAGAAAGCAATGTTACCAGGAGGACATGGTATAGGTAACTTCACTTGGGAGAGGTTAGGGATGAAAATGGTCAGACACTGTGGGGGTTTGCCAGTGGCCATAATTGTGCTCGGAGGACTTTTGGCGACAAAACACACATTGAAAGACTGGGAGATGGTATACCGGAATATTAATTCTTATTTAAGAAGGGGTAAAGGCCATGAACAAGAATTTGGAGGAGTATCAGAGGTGCTAGCTTCAAGCTATTATGATCTTCCATACCAACTGAAACCGTGTTTCCTTTATTTGGGTCATTTTCCAGAGGATTTTGAGATACCCACCAAAAAATTGATGCGAATGTGGGTGGCAGAAGGAATAGTGTCATCTGTGCAGGGGGAAACAGCAGAAGATGTCGCAGAACGTTATTTGGATGAGCTTATAGAGAGGTGTATGGTTCAGGTTGGAAGAAGGAACTTTATTGGTAGGGTAAAAACTTGTCGCCTCCATGACCTTATGCGAGACTTATGCTTGTCAAAAGCAAAAGAGGAAAATTTTCTGCAAGCTACTCATCTTAGGCACAAAAATGACCCAGTTGCAGCATCTTCTTCCATGGTGCCCATAGTAACACCAATGGCTAAAATTCGCAGACTCGCCATCTATTTGGATGAAGGTGTCAATAGATGTATCTCCTCAGAATATGAAAAGTCTTCTCATCTCCGCTCTCTTTTATTTTTCTATGCAAAAGAAGTTGGGATGATCAATTGGGAGCAACTAAAGCCAGTCCATCTGTATCTTCCTAAAAGCTTTACTATAAATGGTGCAGACAAGTTGCGATTGGATAGTTTGAACAACCTAAAGACTCTGAGAAATGTTGATGCAAGAAAATGTTGTATAAAAGATCTGGTCAAATTGACGAATCTCTCTAAATTAGGAATGCATTCTGTGAAAAGCTATGAAGAGTTGAAGGTAATCCTCAAACACCCAAGCCCCATCTTAAACAGCCTTTGGTTATTGTCCTTGCAGATCTGGGGTGAGAGAGTTGAAGAAAAAGATTTAAGACAATTATTTTCAGATTGTCATCACGATTTTTATAGACTATCTCTTGGTGCAGCGCTTAGCAAGTTACCTGAATACAACTCATTTCCTCCTAATCTCATCAAGTTAACATTATGGGGATCTAGACTTGTGGAAGACCCAATGCCAACATTGGGGAAGCTACCACACTTACAATTCCTAAGATTACCACATACATACTTTGGGAAGGAAATCGTTTGCTTGACAGAAAGTTTTCCACGGCTCAAATATTTATTCATTTCTAACTTTCCAAAGCTAGAGAAGTGGAAGATATATGACACAGCCATGCCCAGTCTTTTAGAGTTGCAGATTAGAAGATGTGAACAATTGAAGAAGCTTCCTGATGGATTGAGATTAGTCACCACCCTCCGGGAATTGGAGATCATAGAGATGCCAAATGGATTTCTAAACAGACTGAAAGTTGGAGGAGAGGATTTCTACAAAGTCCAGCAAGTGCATTCCATCAAACTCTGGGCGAGATCATCATGCTTCTAA 2364 41.58 MAEAILFCALERIGDLLIQQADFLGKVGDDVQLLQTELRRMQCFLKDASARQEEDQKIRNWVAEIRDVAYDAEDVVESYILKVVFRRGRSIHTIGNMLATWEVGSEIEDIKAKISNLTRSLETYGIRPIREGDDSRFAYEGRQQLRRTYSHLVEDDVVGLEDKTKELVTLLVKEERYQVISICGMGGLGKTTLARKRKLYQIQWEKKCLVILDDLWTMQAWNSLRPAFPIGKSRSKILLTTRNKDVATYVDPKALIHEVQCLTEEMSWELLQKKAMLPGGHGIGNFTWERLGMKMVRHCGGLPVAIIVLGGLLATKHTLKDWEMVYRNINSYLRRGKGHEQEFGGVSEVLASSYYDLPYQLKPCFLYLGHFPEDFEIPTKKLMRMWVAEGIVSSVQGETAEDVAERYLDELIERCMVQVGRRNFIGRVKTCRLHDLMRDLCLSKAKEENFLQATHLRHKNDPVAASSSMVPIVTPMAKIRRLAIYLDEGVNRCISSEYEKSSHLRSLLFFYAKEVGMINWEQLKPVHLYLPKSFTINGADKLRLDSLNNLKTLRNVDARKCCIKDLVKLTNLSKLGMHSVKSYEELKVILKHPSPILNSLWLLSLQIWGERVEEKDLRQLFSDCHHDFYRLSLGAALSKLPEYNSFPPNLIKLTLWGSRLVEDPMPTLGKLPHLQFLRLPHTYFGKEIVCLTESFPRLKYLFISNFPKLEKWKIYDTAMPSLLELQIRRCEQLKKLPDGLRLVTTLRELEIIEMPNGFLNRLKVGGEDFYKVQQVHSIKLWARSSCF* 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 978957 981975 + Vvi3g89 Vvi3g89 783764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g89 787 CDD RX-CC_like 2 119 IPR038005 -
Vvi3g89 787 SUPERFAMILY L domain-like 432 756 - -
Vvi3g89 787 Gene3D Ribonuclease Inhibitor 493 764 IPR032675 -
Vvi3g89 787 Gene3D - 141 198 IPR027417 -
Vvi3g89 787 PANTHER DISEASE RESISTANCE RPP8-LIKE PROTEIN 3-RELATED 17 755 - -
Vvi3g89 787 Gene3D - 6 122 - -
Vvi3g89 787 Pfam Rx N-terminal domain 9 84 IPR041118 -
Vvi3g89 787 Gene3D - 353 445 IPR036388 -
Vvi3g89 787 PRINTS Disease resistance protein signature 179 194 - -
Vvi3g89 787 PRINTS Disease resistance protein signature 717 733 - -
Vvi3g89 787 Gene3D - 261 352 IPR042197 -
Vvi3g89 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 368 IPR027417 -
Vvi3g89 787 Pfam NB-ARC domain 195 354 IPR002182 GO:0043531
Vvi3g89 787 PANTHER DISEASE RESISTANCE PROTEIN RP 17 755 IPR044974 GO:0006952
Vvi3g89 787 Gene3D - 199 256 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g89 - - - vvi:100246924 1129.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g89 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014648 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 13 16