Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g890 ATGTTACGGTTTTCGCTTCAACGAGTGAGAAATTTCAAGTCTTTGAGGCCTGAGCTCTTCGCTTTGGGAAATTCTCGTTTCTCTACTGCGACTGAGCCATCTTCGAAGCAACGTAACCCACCGAGGGTTCCCAATCTCATTGGAGGTAGTTTCGTGGATTCGCAATCAAGTGAATTCATTGATGTTATAAATCCTGCAACACAACAAGTTGTTTCACAAATTCCTTTAACTAGCAATGAAGAGTTCAAGGCTGCAGTATCTGCAGCGAAACAAGCTTTTCCAGCATGGCGAAACACACCAGTTACAACCCGTCAGCGCATCATGTTCAAGCTCCAACAACTTATTCGGAGAGACATTGATAAGCTTGCCATGAATATTACTACCGAACAGGGAAAAACCTTGAAGGATGCACATGGTGATGTGTTCCGTGGGCTAGAGGTGGTGGAACATGCATGTGGAATGGCTACTCTACAAATGGGGGAGTTCGTTCCAAATGTGTCTAGTGGAATTGATACTTACAGCATTAGAGAGCCACTTGGTGTTTGTGCTGGGATCTGCCCTTTCAACTTTCCAGCAATGATTCCGTTATGGATGTTCCCAATTGCAGTTACATGTGGTAATACCTTTGTCTTAAAGCCATCAGAGAAAGATCCAGGGGCTTCTTTAATGCTTGCCGAGTTAGCAATGGAGGCTGGTTTGCCTGATGGTGTATTAAATATTGTTCACGGCACCCGTAACATTGTCAATGCTATTTGTGATGATGAAGATATCCGAGCTGTATCATTTGTTGGTTCAAATACGGCTGGCATGCACATATATTCAAGAGCATCAGCCAAAGGAAAACGTGTTCAGTCCAATATGGGAGCCAAAAATCATGCCATCGTCTTGCCTGATGCTAGCTTGGATGCTACTTTGAATGCTCTAGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGTATGGCACTGAGCACAGTAGTCTTCGTTGGAGACTCAAAATCATGGGAAGATAAGCTACTGGAGCGTGCCAAAGCACTGAAAGTAAATTCTGGAACGGAACCTGATGCAGATCTTGGGCCAGTGATCAGCAAAGAGGCAAAGGAACGGATATGCAAATTGATTCAAAATGGTGTTGACAGTGGTGCCAGACTGGTGCTCGATGGGAGGAACATTGTGGTTCCAGGATATGAGCATGGCAACTTTATTGGTCCCACCATCTTATCTGATGTCACGGCCGATATGGAGTGTTACAAGGAGGAGATATTTGGCCCGGTTCTTCTTTGCATTCAGGCAGACAGCTTAGATGAGGCCATAAACATAGTTAACAGAAATAAATATGGCAATGGAGCTTCTATATTTACATCATCTGGTGTAGATGCTAGGAAATTTCAGACAGAGATTGAGGCTGGGCAGGTTGGCATCAATGTCCCAATACCAGTTCCACTTCCATTTTTCTCGTTTACTGGATCCAAGGCTTCTTTTGCAGGGGATCTCAATTTCTATGGCAAGGCTGGAGTTCAGTTTTACACCCAGATCAAAACAGTGACTCAACAATGGAAGGGATTGGCAAGTGGGAGTGGAGTTTCCTTGGCAATGCCCACTTCTCAGAAATCACAATAA 1620 44.44 MLRFSLQRVRNFKSLRPELFALGNSRFSTATEPSSKQRNPPRVPNLIGGSFVDSQSSEFIDVINPATQQVVSQIPLTSNEEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKLQQLIRRDIDKLAMNITTEQGKTLKDAHGDVFRGLEVVEHACGMATLQMGEFVPNVSSGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASLMLAELAMEAGLPDGVLNIVHGTRNIVNAICDDEDIRAVSFVGSNTAGMHIYSRASAKGKRVQSNMGAKNHAIVLPDASLDATLNALVAAGFGAAGQRCMALSTVVFVGDSKSWEDKLLERAKALKVNSGTEPDADLGPVISKEAKERICKLIQNGVDSGARLVLDGRNIVVPGYEHGNFIGPTILSDVTADMECYKEEIFGPVLLCIQADSLDEAINIVNRNKYGNGASIFTSSGVDARKFQTEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVQFYTQIKTVTQQWKGLASGSGVSLAMPTSQKSQ* 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11598410 11619004 - Vvi3g890 Vvi3g890 784565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g890 539 Pfam Aldehyde dehydrogenase family 51 515 IPR015590 GO:0016491
Vvi3g890 539 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 10 536 - -
Vvi3g890 539 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 45 519 IPR010061 GO:0004491
Vvi3g890 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 313 324 IPR016160 GO:0016491
Vvi3g890 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 62 496 IPR016162 GO:0016491
Vvi3g890 539 SUPERFAMILY ALDH-like 40 520 IPR016161 GO:0016491
Vvi3g890 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 288 488 IPR016163 GO:0016620
Vvi3g890 539 CDD ALDH_F6_MMSDH 43 519 IPR010061 GO:0004491
Vvi3g890 539 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 10 536 IPR010061 GO:0004491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g890 K00140 mmsA, iolA, ALDH6A1; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] - vvi:100266351 1057.74
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g890 Blo02g00869 . . . . . . Bma12g00367 . . . . . . . . Cpe15g00387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi1g738 ECH 55 539 Aldehyde Dehydrogenase Gene Family AT3G24503 55.6 4.1e-158 555.1
Vvi17g722 ECH 54 539 Aldehyde Dehydrogenase Gene Family AT3G24503 55.0 2.6e-157 552.4
Vvi14g1384 ECH 51 536 Aldehyde Dehydrogenase Gene Family AT3G24503 53.6 3.0e-153 538.9
Vvi17g722 ECH 1 539 Aldehyde Dehydrogenase Gene Family AT3G48000 79.6 1.7e-258 888.6
Vvi1g738 ECH 1 539 Aldehyde Dehydrogenase Gene Family AT3G48000 76.7 1.6e-248 855.5
Vvi14g1384 ECH 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 75.5 1.5e-243 839.0
Vvi1g736 ECH 142 572 Aldehyde Dehydrogenase Gene Family AT3G48000 72.4 2.4e-188 655.6
Vvi1g583 . 1 389 Aldehyde Dehydrogenase Gene Family AT3G48000 67.5 2.1e-168 589.3
Vvi17g722 ECH 1 382 Aldehyde Dehydrogenase Gene Family AT1G23800 77.5 2.1e-173 605.5
Vvi1g738 ECH 5 382 Aldehyde Dehydrogenase Gene Family AT1G23800 77.6 1.4e-169 592.8
Vvi14g1384 ECH 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 75.7 9.3e-169 590.1
Vvi1g736 ECH 142 415 Aldehyde Dehydrogenase Gene Family AT1G23800 74.1 6.8e-119 424.5
Vvi1g583 . 1 232 Aldehyde Dehydrogenase Gene Family AT1G23800 65.2 1.5e-97 353.6
Vvi7g1259 ECH 44 548 Aldehyde Dehydrogenase Gene Family AT4G34240 66.9 6.2e-197 684.1
Vvi18g247 ECH 73 550 Aldehyde Dehydrogenase Gene Family AT4G34240 65.1 9.6e-182 633.6
Vvi7g1259 ECH 134 544 Aldehyde Dehydrogenase Gene Family AT1G44170 71.3 2.1e-171 599.0
Vvi18g247 ECH 138 548 Aldehyde Dehydrogenase Gene Family AT1G44170 68.6 6.9e-167 583.9
Vvi4g1066 . 77 491 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 5.2e-122 434.9
Vvi6g195 . 67 481 Aldehyde Dehydrogenase Gene Family AT1G44170 52.3 5.7e-121 431.4
Vvi4g1066 . 17 494 Aldehyde Dehydrogenase Gene Family AT4G36250 65.3 1.1e-187 653.3
Vvi6g195 . 5 483 Aldehyde Dehydrogenase Gene Family AT4G36250 55.5 1.1e-163 573.5
Vvi19g1170 . 29 526 Aldehyde Dehydrogenase Gene Family AT1G79440 78.9 6.9e-233 803.5
Vvi19g1168 . 66 558 Aldehyde Dehydrogenase Gene Family AT1G79440 68.6 9.8e-203 703.4
Vvi19g1169 . 1 491 Aldehyde Dehydrogenase Gene Family AT1G79440 70.5 1.4e-201 699.5
Vvi3g890 . 11 503 Aldehyde Dehydrogenase Gene Family AT2G14170 83.2 3.7e-243 837.8
Vvi3g891 . 186 565 Aldehyde Dehydrogenase Gene Family AT2G14170 76.9 4.5e-172 601.7
Vvi17g683 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.8 5.7e-245 843.6
Vvi14g1460 ECH 2 499 Aldehyde Dehydrogenase Gene Family AT1G74920 75.2 5.5e-232 800.4
Vvi17g684 . 1 249 Aldehyde Dehydrogenase Gene Family AT1G74920 79.1 1.8e-118 423.3
Vvi17g685 ECH 18 186 Aldehyde Dehydrogenase Gene Family AT1G74920 60.5 2.1e-61 233.8
Vvi14g611 . 1 122 Aldehyde Dehydrogenase Gene Family AT1G74920 65.6 8.1e-42 168.7
Vvi17g683 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G48170 80.6 1.1e-251 865.9
Vvi14g1460 ECH 2 499 Aldehyde Dehydrogenase Gene Family AT3G48170 72.0 1.3e-228 789.3
Vvi17g684 . 1 249 Aldehyde Dehydrogenase Gene Family AT3G48170 79.9 1.5e-120 430.3
Vvi17g685 ECH 23 186 Aldehyde Dehydrogenase Gene Family AT3G48170 61.0 1.1e-62 238.0
Vvi14g611 . 1 122 Aldehyde Dehydrogenase Gene Family AT3G48170 66.4 6.3e-42 169.1
Vvi11g660 ECH 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 88.5 5.5e-264 906.7
Vvi4g512 ECH 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 86.3 2.9e-257 884.4
Vvi17g517 . 14 547 Aldehyde Dehydrogenase Gene Family AT5G62530 82.4 3.8e-274 940.6
Vvi5g75 . 1 592 Aldehyde Dehydrogenase Gene Family AT3G66658 81.7 2.0e-292 1001.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004517 1 1 3 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 40