Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi3g890 | ATGTTACGGTTTTCGCTTCAACGAGTGAGAAATTTCAAGTCTTTGAGGCCTGAGCTCTTCGCTTTGGGAAATTCTCGTTTCTCTACTGCGACTGAGCCATCTTCGAAGCAACGTAACCCACCGAGGGTTCCCAATCTCATTGGAGGTAGTTTCGTGGATTCGCAATCAAGTGAATTCATTGATGTTATAAATCCTGCAACACAACAAGTTGTTTCACAAATTCCTTTAACTAGCAATGAAGAGTTCAAGGCTGCAGTATCTGCAGCGAAACAAGCTTTTCCAGCATGGCGAAACACACCAGTTACAACCCGTCAGCGCATCATGTTCAAGCTCCAACAACTTATTCGGAGAGACATTGATAAGCTTGCCATGAATATTACTACCGAACAGGGAAAAACCTTGAAGGATGCACATGGTGATGTGTTCCGTGGGCTAGAGGTGGTGGAACATGCATGTGGAATGGCTACTCTACAAATGGGGGAGTTCGTTCCAAATGTGTCTAGTGGAATTGATACTTACAGCATTAGAGAGCCACTTGGTGTTTGTGCTGGGATCTGCCCTTTCAACTTTCCAGCAATGATTCCGTTATGGATGTTCCCAATTGCAGTTACATGTGGTAATACCTTTGTCTTAAAGCCATCAGAGAAAGATCCAGGGGCTTCTTTAATGCTTGCCGAGTTAGCAATGGAGGCTGGTTTGCCTGATGGTGTATTAAATATTGTTCACGGCACCCGTAACATTGTCAATGCTATTTGTGATGATGAAGATATCCGAGCTGTATCATTTGTTGGTTCAAATACGGCTGGCATGCACATATATTCAAGAGCATCAGCCAAAGGAAAACGTGTTCAGTCCAATATGGGAGCCAAAAATCATGCCATCGTCTTGCCTGATGCTAGCTTGGATGCTACTTTGAATGCTCTAGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGTATGGCACTGAGCACAGTAGTCTTCGTTGGAGACTCAAAATCATGGGAAGATAAGCTACTGGAGCGTGCCAAAGCACTGAAAGTAAATTCTGGAACGGAACCTGATGCAGATCTTGGGCCAGTGATCAGCAAAGAGGCAAAGGAACGGATATGCAAATTGATTCAAAATGGTGTTGACAGTGGTGCCAGACTGGTGCTCGATGGGAGGAACATTGTGGTTCCAGGATATGAGCATGGCAACTTTATTGGTCCCACCATCTTATCTGATGTCACGGCCGATATGGAGTGTTACAAGGAGGAGATATTTGGCCCGGTTCTTCTTTGCATTCAGGCAGACAGCTTAGATGAGGCCATAAACATAGTTAACAGAAATAAATATGGCAATGGAGCTTCTATATTTACATCATCTGGTGTAGATGCTAGGAAATTTCAGACAGAGATTGAGGCTGGGCAGGTTGGCATCAATGTCCCAATACCAGTTCCACTTCCATTTTTCTCGTTTACTGGATCCAAGGCTTCTTTTGCAGGGGATCTCAATTTCTATGGCAAGGCTGGAGTTCAGTTTTACACCCAGATCAAAACAGTGACTCAACAATGGAAGGGATTGGCAAGTGGGAGTGGAGTTTCCTTGGCAATGCCCACTTCTCAGAAATCACAATAA | 1620 | 44.44 | MLRFSLQRVRNFKSLRPELFALGNSRFSTATEPSSKQRNPPRVPNLIGGSFVDSQSSEFIDVINPATQQVVSQIPLTSNEEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKLQQLIRRDIDKLAMNITTEQGKTLKDAHGDVFRGLEVVEHACGMATLQMGEFVPNVSSGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASLMLAELAMEAGLPDGVLNIVHGTRNIVNAICDDEDIRAVSFVGSNTAGMHIYSRASAKGKRVQSNMGAKNHAIVLPDASLDATLNALVAAGFGAAGQRCMALSTVVFVGDSKSWEDKLLERAKALKVNSGTEPDADLGPVISKEAKERICKLIQNGVDSGARLVLDGRNIVVPGYEHGNFIGPTILSDVTADMECYKEEIFGPVLLCIQADSLDEAINIVNRNKYGNGASIFTSSGVDARKFQTEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVQFYTQIKTVTQQWKGLASGSGVSLAMPTSQKSQ* | 540 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 11598410 | 11619004 | - | Vvi3g890 | Vvi3g890 | 784565 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi3g890 | 539 | Pfam | Aldehyde dehydrogenase family | 51 | 515 | IPR015590 | GO:0016491 | |
Vvi3g890 | 539 | PANTHER | METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE | 10 | 536 | - | - | |
Vvi3g890 | 539 | TIGRFAM | MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) | 45 | 519 | IPR010061 | GO:0004491 | |
Vvi3g890 | 539 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 313 | 324 | IPR016160 | GO:0016491 | |
Vvi3g890 | 539 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 62 | 496 | IPR016162 | GO:0016491 | |
Vvi3g890 | 539 | SUPERFAMILY | ALDH-like | 40 | 520 | IPR016161 | GO:0016491 | |
Vvi3g890 | 539 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 288 | 488 | IPR016163 | GO:0016620 | |
Vvi3g890 | 539 | CDD | ALDH_F6_MMSDH | 43 | 519 | IPR010061 | GO:0004491 | |
Vvi3g890 | 539 | PANTHER | MALONATE-SEMIALDEHYDE DEHYDROGENASE | 10 | 536 | IPR010061 | GO:0004491 |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi3g890 | K00140 | - | vvi:100266351 | 1057.74 |