Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g891 ATGGACATACAAGATTGTACAGAGTTAAATGAAATCCCGCAGATGCTTCCGCCTCCACCTGGAAGCTTTATAGATCGTGAAGAACTTATCCAACATGTTGGGGACTTTGCCTTATCCCAGGGCTATGTAGTTACCATTAAGCAGTCCAAGAAGGACAAAGTGGTAGTGCTTGGTTGTGACAGAGGGGGTGTTTACCGTAACAGGCGTAAACTTGTTGATGAAAGTTCTGCTGAACAGGTGCGCAAAAGAAAAACAGGTTCACGTCTTACAAATTGCCCTTTTGAAGTCGTGGGTAAAAAGGAAGATGGCTTGTGGGTACTTGCCATTAAAAATGGAGAACATAACCATGATCCCATCAGGGACATTTCAGAACACCCTTCATCTCGTCGCTTCACTGAGAGAGAAGTATTGCTTATTAAAGATATGACTGAAGCTGGTTTAAAACCGCGCCAAATTTTAAAGAGACTGAGACAAAACAATCCGGAGCTTTTATCAACACCAAAGCATGTTTACAATGTTAAAGCTAAGCTCCGACAAGGAAATTTAACAGTGAGGAACTTCAAGTCATTGAGAGTTAAATCATCTGTGGAAAATTCTCATATTTCAACAGCTAATGAGCCATCTTGGAGGCAACGCAATCCTCCAAGGGTTCCCAATCTCATTGGAGGTAGATTTGTTGATTCACAGTCATTTGCATCCATTGATGTTACAAATCCTGCAACACAGAAAGTTGTTTCTCAAGTCCCTTTAACCACCAATGAAGAATTCAGAGCTGCAATATTTGCTGCAAAACGAGCTTTTCCTTCATGGCGAGACACACCAGTTACCACCCGTCAACGTATCATGTTCAAATTCCAAGAACTCATTCGGAGAGATATTGATAAGATTGCTATGAATATTACTACTGAACATGGAAAGACATTGAAGGATGCTTACACTGATGTACACCGTGGACTTGAGGTGGTGGAACATGCTTGTGGAATGGCGACTCTACAAATGGGGGAATTTGTTTCAAATGTATCAAATGGAATTGATACCTATAGCATTAGAGAGCCACTTGGTGTCTGTGCAGGGATTTGTCCATTCGATTTTCCAGCAATGATTCCCTTATGGATGTTTCCAATTGCAGTTACTTGTGGCAATACGTTCATTCTAAAGCCATCAGAGAAGGATCCAGGGGCTACTATTATACTTGCAGAGTTAGCAATGGAGGCTGGCTTGCCTAATGGTGTCTTAAACATTGTTCATGGCACTGTTGACATTATTAATGCCATTTGTGATGATGATGATATTAAAGCTATATCATTTGTTGGTTCAAACACAGATGGCATGTACATATATGCAAGGGCATCAGCTAAAGGGAAACGTGTGCAGTCTAATATAGGAGCCAAGAATCATGCAATTGTCATGCCTGATGCCAGCAAGGATGCTACCTTGAATGCACTAGTTTCTGCTGGTTTTGGTGCTGCAGGACAAAGATGCATGGTGCTCAGCACGGTAGTCTTTGTTGGAGGCTCAAAATCATGGGAAGATAAACTAGTGGAGTGTGCCAAGGCTCTTAAAGTAAATGCTGGAATAGAACCTGATGCAGACCTTGGTCCAGTGATTAGCAAACAGGTGAAGGAACGAATATGCAGATTGATCCAAGCTGGAGTGGACAGTGGTGCCAGACTCGTGCTTGACGGAAGAAATATTGAGGCATGTCTTACCACTTATTTGTCTATGATTATTTTGCTTGATTTCTTTTGGTCCAATCAATCATTTTCTTATATTCCTTAA 1779 41.43 MDIQDCTELNEIPQMLPPPPGSFIDREELIQHVGDFALSQGYVVTIKQSKKDKVVVLGCDRGGVYRNRRKLVDESSAEQVRKRKTGSRLTNCPFEVVGKKEDGLWVLAIKNGEHNHDPIRDISEHPSSRRFTEREVLLIKDMTEAGLKPRQILKRLRQNNPELLSTPKHVYNVKAKLRQGNLTVRNFKSLRVKSSVENSHISTANEPSWRQRNPPRVPNLIGGRFVDSQSFASIDVTNPATQKVVSQVPLTTNEEFRAAIFAAKRAFPSWRDTPVTTRQRIMFKFQELIRRDIDKIAMNITTEHGKTLKDAYTDVHRGLEVVEHACGMATLQMGEFVSNVSNGIDTYSIREPLGVCAGICPFDFPAMIPLWMFPIAVTCGNTFILKPSEKDPGATIILAELAMEAGLPNGVLNIVHGTVDIINAICDDDDIKAISFVGSNTDGMYIYARASAKGKRVQSNIGAKNHAIVMPDASKDATLNALVSAGFGAAGQRCMVLSTVVFVGGSKSWEDKLVECAKALKVNAGIEPDADLGPVISKQVKERICRLIQAGVDSGARLVLDGRNIEACLTTYLSMIILLDFFWSNQSFSYIP* 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11685126 11703195 - Vvi3g891 Vvi3g891 784566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g891 592 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 219 566 IPR010061 GO:0004491
Vvi3g891 592 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 2 566 IPR010061 GO:0004491
Vvi3g891 592 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE ISOFORM X1 2 566 - -
Vvi3g891 592 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 462 565 IPR016163 GO:0016620
Vvi3g891 592 SUPERFAMILY ALDH-like 211 565 IPR016161 GO:0016491
Vvi3g891 592 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 221 461 IPR016162 GO:0016491
Vvi3g891 592 Pfam Aldehyde dehydrogenase family 225 564 IPR015590 GO:0016491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g891 K00140 - vvi:100261145 1115.91