Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g899 ATGAATCTCAATTCAACAAACAACCTAAGAATGATGAGTACCGTTCAATGGCTGCTTCAGATCTCCTTATTACTATGGCTAAGCAAAGGATTAGCAGCAACTCAAGCGAAGCCTGGTTGTCAAGAGAGGTGTGGAGACGTTGACATTCCATACCCCTTCGGAATTGGATCTGCTGGTTGCTACTTCGATGAATGGTTCGAAGTAACTTGCAACAACTCTACCGACCCTCCTAAGCCTTTCCTGAAAGGAGTAAATCTGGAGGTGCTGAATGTTTCATTAGATGGCACCATCCGGGTCAACAACCCAGTACTCCTTTCTCAGAATTGTTCCGGCAAACCATCAAATGACACGCAGTGGTGGGAGGGAGGCCCCTTTTCATTCTCCAACACCTACACTAGATTCACTGCTGTGGGTTGCAGCGCCCTGGTCTACATTATGCAGGATGATACAGTAATCGGGGGATGCATGACCTTCTGCAAAAAGGACGCAACTGCGGCAAAGAAAGCCAGCTGCTATGGCTTGGAGTGTTGCCAAACCCAAGTCCCTCCAGGCCTCCTGTCCTTCACTGCAAATTTAGGAACCTTTTCTGATGGTAGTGCTGATGAGCAAGAACAATGCAAATTCGCGTTCATGGTGGACCAAGAATGGTTTATCTCAAATGTACCAGATCCACATACGGTGAAAGATATGGAATACGTTCCAGCAGTGCTGGACTGGCGGATATACAACGCAACGTGCGCTGCCTCCACCTCAAACCTCAACACATCCACAAGTTTTTGTGGCGAGAATACCCTTTGTTCAACTGACACTCAAACCTCAAGTCTCATCTGCAGTTGTTTCCCGGTATATGAAGGCAACCCTTATCTTCCCCAAGGATGTCAAGGTACACAATCTATAGAGGAGGATAAAGGAATTGGTCAAAGGCCAATCTTTCCTTCATCTTTTTGTTTTCAAATAGTCCTCCCATGCTCTCTTAAACATAACTTTCCTATTTTTTTTTATCTGAGTAGTGTTACCAGGTATGTTCCCATCTTCTATCTTTTTCTCTCTTTCCTCTATTCTTACAATACTAAAAAATATTGCTTTCTTATTTTTATAAAAATGAGAAAAGTTCAAACAAACTTGAGCTGGGCCAAAAGACTGGATCAACCTATGGTTTTCAAGTCAAGTTTGAACTTAGACCAACCATTTTGCACTCACCTTATTTGTGCAGTCATAACAATAGGAGCGCTTGGAACATTACTTCTGGTACTCTGTGCATGGTGGTTGTACATAGTACTAAAAAGGAGAAAGAAAATTAAGTACAAAGAGAAATGCTTCAATAGAAATGGTGGTTTACTCTTGGAACAACAATTATCTTCAACTGAAGGAAATATTGATAAAACCAAATTATTTACTTCCAAAGAGTTGGAGAAAGCCACTGATCGTTATAATGAAAATCGGGTTATTGGACAAGGAGGCGAAGGTACTGTTTACAAAGGAATGTTGATGGATGGAAGAATTGTTGCAGTTAAAAAGTTGAAGATAATGAGTGATAGCAAACTTGAACAATTCATTAATGAGGTTGTAATTCTATGCCAAATTAATCACAGAAATGTGGTTAAGCTATTAGGATGTTGTTTGGAGACAGAAAGGGACAGCGGGAAAAAAATAATCACAATGACGGCTCCGACGAAGGTTCCTATCACGACCCATAGCCGAAGCCCAAAGATAAAAGTCGGCTTCAAGAGTTCACTATTTGAGAACGCAACGTCCTCTCTGAAAGTGCTCCCCTCCCCAAAGAAAACTCGCTAA 1794 41.81 MNLNSTNNLRMMSTVQWLLQISLLLWLSKGLAATQAKPGCQERCGDVDIPYPFGIGSAGCYFDEWFEVTCNNSTDPPKPFLKGVNLEVLNVSLDGTIRVNNPVLLSQNCSGKPSNDTQWWEGGPFSFSNTYTRFTAVGCSALVYIMQDDTVIGGCMTFCKKDATAAKKASCYGLECCQTQVPPGLLSFTANLGTFSDGSADEQEQCKFAFMVDQEWFISNVPDPHTVKDMEYVPAVLDWRIYNATCAASTSNLNTSTSFCGENTLCSTDTQTSSLICSCFPVYEGNPYLPQGCQGTQSIEEDKGIGQRPIFPSSFCFQIVLPCSLKHNFPIFFYLSSVTRYVPIFYLFLSFLYSYNTKKYCFLIFIKMRKVQTNLSWAKRLDQPMVFKSSLNLDQPFCTHLICAVITIGALGTLLLVLCAWWLYIVLKRRKKIKYKEKCFNRNGGLLLEQQLSSTEGNIDKTKLFTSKELEKATDRYNENRVIGQGGEGTVYKGMLMDGRIVAVKKLKIMSDSKLEQFINEVVILCQINHRNVVKLLGCCLETERDSGKKIITMTAPTKVPITTHSRSPKIKVGFKSSLFENATSSLKVLPSPKKTR* 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11911753 11922553 - Vvi3g899 Vvi3g899 784574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g899 597 PANTHER - 23 544 - -
Vvi3g899 597 Pfam Protein kinase domain 477 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g899 597 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 544 IPR045274 GO:0007166
Vvi3g899 597 Pfam Wall-associated kinase 169 251 IPR013695 GO:0004674|GO:0016021
Vvi3g899 597 Gene3D Phosphorylase Kinase; domain 1 448 547 - -
Vvi3g899 597 ProSiteProfiles Protein kinase domain profile. 477 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g899 597 SUPERFAMILY Protein kinase-like (PK-like) 459 553 IPR011009 -
Vvi3g899 597 Pfam Wall-associated receptor kinase galacturonan-binding 40 100 IPR025287 GO:0030247
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g899 - - - vvi:100854955 581.252
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g899 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019359 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76583 PF00069 Pkinase 8.60E-11 CL0016 Vvi PK