Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g9 ATGGCGGAGGAGACGATCGAGAAGAGCAGTTCATCAGAAGAGGAGAACAACAAGGCAGTGGATCCAACTTTTTTCAGCTGTTTGCTTCAGCCTTCGAGTGCTGATTCGGATCCACAGTACATTGGAATTCGTCGTCTTCTTCTCCGCCGGAAGGCCGAGTCCGGTGTTCATCGCCGGAAGGATTGGAGATGCAATGGAAAAGGCTATGTCGCATACCGGAATTACATTCGCAGGCCGAGGAATTGGGAAAGTTTGCATGCACCAAGCCACTCAAGCACTCCTGGTCAAAGTGGGCGATGGATTCCGTCTCCAGCTCCACTCTCCCTTTTGTTTGAGGTGGACAGCTGGAGTTCCAGCAGGGACCTACGAAGTGGCTATCAAGCTTCAAGTCACAGGACCAGTTTCAGCTCAAGTGCAAGTGACAACGATCCCCCAGTTCGAAAGGTTGAACCTGCATATTCCTTTGTAGGAATGCATTGCATCTTTGACCAATGCAAAGCTTCAGTTACAGTTTTGAAGTTTGGGAACAAGAGTTCTGATCTACTAGCATATGGAGCAGCAGATGGAACCTTGACAGTCTGCACTGTCTCTCAGCCTCCTTCAATCATCAAAGAATTGAGAGGGCATTCTAAAGATGTGACAGATTTTGACTTCTCATCCAACAATCAGTACATTGCATCCTCATCAATGGATAAAAGTGTCAGAGTATGGGAGATATCAAAAGGCCTTTGTATTCGAGTAATATATGGAATCTCTTCACAATTGTGTATTCGTTTTCATCCTGTGAATAACAACTTCCTCTCAGCTGGCAATGCAAACAGAGAAATCACTGTTTTCAATTTCAGCACTGGAAGAGTTATTAATAAAGCAGTTTTTGATGATGCGGTCACGGCTGTGGACCATGATCACACTGGTCAACTTATTTTTTGTGGGGACGCACAGGGATGTATATACACAGTAAATATGAACTCTCGCACAGGATCATTATCCCGTTCTCATCGCAATCGGAGTAGCAACAATCGTAAATCTCCGGTCACAACTGTTCAGTACCGAAGTTTCTCTCTGCTGGCTCGGGGCCCTGTATTGCTGACATGTACTCAAGATGGAAGTTTGTCCTTTTTCAGTGTTGCTCTGGAAATACAGGGTTATTTGACTCCTCGTTGCTCACTCAAATTGACACCACGAGTGCACAGCATCCGCGCTTCCTTCTGCCCTCTGCTTTCCCTTGAAAAGGGAGAATACATTGTTGCTGGAAGTGAAGATTCAAATGTCTACTTCTATGATCTGACTCGGCCAAGGCATACATGTGTAAACAAGTTACAGGGTCATGGTTCTCCGGTCATTGGTGTTGCTTGGAACCATGGAGAGAACTTGCTGGCTTCATCCGATTCTGATGGTACTGTCATTGTATGGAAGAGAGCAAAGACAAGTTGA 1434 45.61 MAEETIEKSSSSEEENNKAVDPTFFSCLLQPSSADSDPQYIGIRRLLLRRKAESGVHRRKDWRCNGKGYVAYRNYIRRPRNWESLHAPSHSSTPGQSGRWIPSPAPLSLLFEVDSWSSSRDLRSGYQASSHRTSFSSSASDNDPPVRKVEPAYSFVGMHCIFDQCKASVTVLKFGNKSSDLLAYGAADGTLTVCTVSQPPSIIKELRGHSKDVTDFDFSSNNQYIASSSMDKSVRVWEISKGLCIRVIYGISSQLCIRFHPVNNNFLSAGNANREITVFNFSTGRVINKAVFDDAVTAVDHDHTGQLIFCGDAQGCIYTVNMNSRTGSLSRSHRNRSSNNRKSPVTTVQYRSFSLLARGPVLLTCTQDGSLSFFSVALEIQGYLTPRCSLKLTPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLTRPRHTCVNKLQGHGSPVIGVAWNHGENLLASSDSDGTVIVWKRAKTS* 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 126115 137455 - Vvi3g9 Vvi3g9 783684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g9 477 Gene3D - 395 477 IPR015943 GO:0005515
Vvi3g9 477 Pfam WD domain, G-beta repeat 203 237 IPR001680 GO:0005515
Vvi3g9 477 Pfam WD domain, G-beta repeat 436 472 IPR001680 GO:0005515
Vvi3g9 477 PANTHER WD REPEAT PROTEIN 26-RELATED 12 476 - -
Vvi3g9 477 Gene3D - 128 253 IPR015943 GO:0005515
Vvi3g9 477 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 206 242 - -
Vvi3g9 477 SMART WD40_4 241 280 IPR001680 GO:0005515
Vvi3g9 477 SMART WD40_4 283 321 IPR001680 GO:0005515
Vvi3g9 477 SMART WD40_4 341 375 IPR001680 GO:0005515
Vvi3g9 477 SMART WD40_4 155 195 IPR001680 GO:0005515
Vvi3g9 477 SMART WD40_4 392 428 IPR001680 GO:0005515
Vvi3g9 477 SMART WD40_4 433 472 IPR001680 GO:0005515
Vvi3g9 477 SMART WD40_4 199 238 IPR001680 GO:0005515
Vvi3g9 477 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 247 IPR001680 GO:0005515
Vvi3g9 477 ProSitePatterns Trp-Asp (WD) repeats signature. 225 239 IPR019775 -
Vvi3g9 477 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 440 477 - -
Vvi3g9 477 SUPERFAMILY WD40 repeat-like 163 473 IPR036322 GO:0005515
Vvi3g9 477 Gene3D - 254 382 IPR015943 GO:0005515
Vvi3g9 477 ProSiteProfiles Trp-Asp (WD) repeats profile. 440 477 IPR001680 GO:0005515
Vvi3g9 477 PANTHER WD REPEAT-CONTAINING PROTEIN 13 12 476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g9 K24739 WDR13; WD repeat-containing protein 13 - vvi:100258922 937.176
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g9 . Blo15g00678 Bda06g00950 . . . . . . . . Cma20g00821 . Car20g00708 . . . . . . . . . . . . . . . . . . . Cone3ag1222 Cone10ag1107 Lsi10g00404 . Chy11g00347 . . . . . . . . . Sed05g3536 . Cmo20g00830 . . . . Cpe16g00266 . Bhi10g01963 Tan05g1257 Cmetu11g1123 . Hepe08g0987 . . . . . . . . . . Csa02g01296 . Cme11g00157
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010476 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 32