Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g904 AAAAATGAAAAATTTACATATTTATTTTATTTTATTATTATTTTATTTTTCTCATTTTTCTTTATTTTATTATTATTATTTTATTATTTTTTCTCTCTCCTCACTTTCTCCCCCAAAACCCTAAATTCCCGCCGCCCCCCTTTCCCTTCTCTTCTTCCCTCCCTTCTTTCTTCTTTTTCCCTCCATTCTTCTTTTTTCAATTTTGAGACAGATGAAGTATATGCGCAGATGACGTTACAACCATTGAGTCCACAAGAGCAAAAGGATGCGTACCTCCCAGCAGAGTTGGGTGTGCCCAGCAAACAACCATCGAATTATTTCTGTAAAACATTGATAGCTAGTGACACAAGTACACATGGAGGCTTCTCTGTTCCTCGCCGAGCAGCTGAAAAAGTGTTTCCTTCTTTGGACTTTTCACAACAGCCTCCAGCCCAAGAGTTAATTGCAAGGGATCTTCATGATAATGAATGGAAATTTAGGCATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACAACAGGTTACTTGCTATTAAAATTCTTCATAAAGCTTGATATTTGA 564 36.7 KNEKFTYLFYFIIILFFSFFFILLLLFYYFFSLLTFSPKTLNSRRPPFPSLLPSLLSSFSLHSSFFNFETDEVYAQMTLQPLSPQEQKDAYLPAELGVPSKQPSNYFCKTLIASDTSTHGGFSVPRRAAEKVFPSLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGYLLLKFFIKLDI* 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12187829 12194131 + Vvi3g904 Vvi3g904 784579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g904 187 SUPERFAMILY DNA-binding pseudobarrel domain 92 176 IPR015300 -
Vvi3g904 187 CDD B3_DNA 106 175 IPR003340 GO:0003677
Vvi3g904 187 Gene3D - 105 183 IPR015300 -
Vvi3g904 187 Pfam B3 DNA binding domain 107 175 IPR003340 GO:0003677
Vvi3g904 187 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 39 176 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi3g904 187 PANTHER AUXIN RESPONSE FACTOR 6 39 176 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g904 Vvi18g508 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14691 PF02362 B3 2.70E-10 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g904 - - vvi:100242923 220.705