Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi3g904 | AAAAATGAAAAATTTACATATTTATTTTATTTTATTATTATTTTATTTTTCTCATTTTTCTTTATTTTATTATTATTATTTTATTATTTTTTCTCTCTCCTCACTTTCTCCCCCAAAACCCTAAATTCCCGCCGCCCCCCTTTCCCTTCTCTTCTTCCCTCCCTTCTTTCTTCTTTTTCCCTCCATTCTTCTTTTTTCAATTTTGAGACAGATGAAGTATATGCGCAGATGACGTTACAACCATTGAGTCCACAAGAGCAAAAGGATGCGTACCTCCCAGCAGAGTTGGGTGTGCCCAGCAAACAACCATCGAATTATTTCTGTAAAACATTGATAGCTAGTGACACAAGTACACATGGAGGCTTCTCTGTTCCTCGCCGAGCAGCTGAAAAAGTGTTTCCTTCTTTGGACTTTTCACAACAGCCTCCAGCCCAAGAGTTAATTGCAAGGGATCTTCATGATAATGAATGGAAATTTAGGCATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACAACAGGTTACTTGCTATTAAAATTCTTCATAAAGCTTGATATTTGA | 564 | 36.7 | KNEKFTYLFYFIIILFFSFFFILLLLFYYFFSLLTFSPKTLNSRRPPFPSLLPSLLSSFSLHSSFFNFETDEVYAQMTLQPLSPQEQKDAYLPAELGVPSKQPSNYFCKTLIASDTSTHGGFSVPRRAAEKVFPSLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGYLLLKFFIKLDI* | 188 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 12187829 | 12194131 | + | Vvi3g904 | Vvi3g904 | 784579 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi3g904 | 187 | SUPERFAMILY | DNA-binding pseudobarrel domain | 92 | 176 | IPR015300 | - | |
Vvi3g904 | 187 | CDD | B3_DNA | 106 | 175 | IPR003340 | GO:0003677 | |
Vvi3g904 | 187 | Gene3D | - | 105 | 183 | IPR015300 | - | |
Vvi3g904 | 187 | Pfam | B3 DNA binding domain | 107 | 175 | IPR003340 | GO:0003677 | |
Vvi3g904 | 187 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 39 | 176 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Vvi3g904 | 187 | PANTHER | AUXIN RESPONSE FACTOR 6 | 39 | 176 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14691 | PF02362 | B3 | 2.70E-10 | CL0405 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi3g904 | - | - | vvi:100242923 | 220.705 |