Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g905 ATGGCTGTCTGCAACGCTGGTATTGCCCTACTCCATTCAAATACACTTCCTTTACTCCATATCTTCATGGTCTCCTTTTTCTTGTCTCTAATGATCCCTTCAGCGAATTCATCATTATCTTTCAGTTTTAATGATTTTGATCCGAATTGTAATCAAATTCATTTTGAGGGGCAGGCTTCTTATTCTGGTGACAAAGCCATCTACCTCACCAGAAGCCAGCAGGAGAAAAAGATGAATGATAGTTGGGGTCGAGCTACATATCGTGAGCCGTTTCACCTTTGGGACAAGGCCTCGAAAAGGATGGCTGATTTCTCTACCAATTTCTCATTTGGAATTGATTCCCAAGGAAAATTTTCTTATGGTGAGGGACTCGCATTCTTTCTTGCTCCATACGGTACCCAATTGCCTTCAGATGTGAGAGGAGGCAGCGGCCTGGGTCTTGTGTCTAACAACCAGCAGGCGCTGAACTCAGAAGCAAATCACTTTTTTGCAGTGGAGTTTGATACTTATCCAAATGATTGGGATCCAAAATATGATCATGTTGAGCTTCTATTGGTATACGACTTCATGCCAAACGGTTGTTTGGCCTCTCATTTGTTTGAAGGAAAAACCTTAAAAAGTTTATATCTCAATCTTATATATTTGATAAATATAAATACAATTTTCATTCATGGCTTTGAAAAAGAACAATGCTTAAAATTTCATACTCTGGGAGGAAAAATAAATCATGTTTCCATCAGTTACGCTTCTAGTTCAAAAAATCTGAGTGTTATCTTTGGCACTGATGATTTGTATGATAACACCACTCCACAAAGCCTCTATTACAAAGTTAATCTGAGCAATTACTTGCCCGAATTCGTTACTATTGGCTTCTCAAGTGCAAGAAAAAATTCGTACGAGATAAACGTCATTTACTCATGGAGTTTCCGTTCATCAGATTTACAAATCTCTGATAGAGTAATCAAATTGGTGGAGTGGGTTTGGACCCTTTATGGAGTAGGAAAGCTTCTTGAAGCAGCTGACCCAAGATTATGTGCAGACTTTGACGAGAAACAAATTGAACGCCTGATGATTGTGGGGCTTTGGTGTGCTCACCCAGACTGCAATATTCGGCCTGCAATAAGGCAAGCAGTTAATGTCCTTAATTATGAAGCTTCATTGCCTGTTCTCCCTTCAAACATGCCTGTGCCAATGTATTATGCTCCTCCAGAAAATACATATGCCTTTTCACTTCAAGCATCCTACACTATCTCAACCAAAGAGCTGGTCCATCAAAAGACTGGGCCTGCATCCAAATTATCAGCAATATTAACCTAG 1317 39.79 MAVCNAGIALLHSNTLPLLHIFMVSFFLSLMIPSANSSLSFSFNDFDPNCNQIHFEGQASYSGDKAIYLTRSQQEKKMNDSWGRATYREPFHLWDKASKRMADFSTNFSFGIDSQGKFSYGEGLAFFLAPYGTQLPSDVRGGSGLGLVSNNQQALNSEANHFFAVEFDTYPNDWDPKYDHVELLLVYDFMPNGCLASHLFEGKTLKSLYLNLIYLININTIFIHGFEKEQCLKFHTLGGKINHVSISYASSSKNLSVIFGTDDLYDNTTPQSLYYKVNLSNYLPEFVTIGFSSARKNSYEINVIYSWSFRSSDLQISDRVIKLVEWVWTLYGVGKLLEAADPRLCADFDEKQIERLMIVGLWCAHPDCNIRPAIRQAVNVLNYEASLPVLPSNMPVPMYYAPPENTYAFSLQASYTISTKELVHQKTGPASKLSAILT* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12199842 12207930 - Vvi3g905 Vvi3g905 784580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g905 438 CDD lectin_legume_LecRK_Arcelin_ConA 39 312 IPR001220 GO:0030246
Vvi3g905 438 SUPERFAMILY Concanavalin A-like lectins/glucanases 39 312 IPR013320 -
Vvi3g905 438 PANTHER - 238 312 - -
Vvi3g905 438 PANTHER - 24 181 - -
Vvi3g905 438 PANTHER - 318 415 - -
Vvi3g905 438 Gene3D Transferase(Phosphotransferase) domain 1 309 402 - -
Vvi3g905 438 Gene3D - 36 308 - -
Vvi3g905 438 ProSitePatterns Legume lectins alpha-chain signature. 283 292 IPR000985 -
Vvi3g905 438 PANTHER RECEPTOR LECTIN KINASE 238 312 - -
Vvi3g905 438 PANTHER RECEPTOR LECTIN KINASE 24 181 - -
Vvi3g905 438 PANTHER RECEPTOR LECTIN KINASE 318 415 - -
Vvi3g905 438 Pfam Legume lectin domain 218 314 IPR001220 GO:0030246
Vvi3g905 438 Pfam Legume lectin domain 38 182 IPR001220 GO:0030246
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g905 - - - vvi:100265547 352.443
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g905 . Blo03g00035 Bda06g01133 . . . . . Cmo19g00508 Cmo11g01451 . . . . . Cpe04g00360 Cpe15g00386 Bhi05g00956 . . . . . . . . . . . . . . . . . Lsi03g00681 Csa07g00619 . Cme01g00179 . . . . . . . . . . . Cma11g01676 Cma19g00490 Car11g01167 Car19g00367 . . . . . . . . . Cla09g01596 . . . . . . . . Chy01g00189 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016599 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8