Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g907 ATGCTTAATGTCTCAATCCCCCCCAACCATGGCTACCTTGAAGAGTGGAAGTATTGCCTCCGATCGCCACAGTTCCCTTTCCCTTCTCTCTTCACCATGATCTCTATTTTCTTCATTCTATTAATGATCCCTTCTGCAACTTCATTAGACTTCAACTTCACCAGTTTCAGTCCCTATAATGATAACATAACCTATGAGGGATCTGCTTTTCCCAGAAACCAAATCATCCAACTAACACAAGCTCAATCAGCGAGCATCGGTTGGGCCACATATGTTCAACCCTTGCACCTATGGGACAAGGCCTCAGGAAATCTCACTGACTTCACCACCCATTTCTCCTTCGTCATAGACACACAGAACCGCTCTGGTAGTCATGGTGATGGGATTGCCTTCTTCCTTATGCCTGCTGATTCACAGAAGCCTAATGTCACAAAGGGTGGGGGTCTTGGTCTTGCAAGTGACACCCAGCCACTGAACACAACCGTGAATCATTTTGTTGCGGTGGAATTTGATATTTATAAGAACCGTTGGGATCCAAACGACACCCACGCAGGTATTGACATCAACTCTGTTCAATCAATCCGTAATGTGAAATGGTGGGATAGTATTATAAATGGGAGGAGAAATGATGCATGGATCAGTTATAACTCTAGTTCTAAAAATCTAAGTGTCGTCTTCACTGGTTTTAGGAATGATAGTACTATTCTGCAGGATAACCTTTATTATGAAGTTGATCTGAGGCTTTACCTCCCAGAATGGGTTAGTTTTGGCTTCTCAGGTGCAACAGGAAATGCATCAGCCATACATGCCATTTATTCATGGAAAGCAGAAACGCCAACTTCCAATCCCAACTCTAATCCTTCAAGAAAAATCAAGGTTAAACTAGTGGTGGGATTGACTGTCGGTGGATGTGCTTTCGTTGGTGGTTTGAGTTTGGTTTTGTTTTTGTTCTTGAAAAGTAGAAGGGGAAAAGTTGATAATCCAGTCATTGATCAGCTGTCCATGGAGGATGACTTTGAAAAAGGTACTGGACCCAAGAAGTTTCGGTACAATGAATTGGCTAGTTCAACCAATAACTTTGCAGAGGAAGGGAAGCTTGGGGAAGGAGGGGTATCAAGTGGGTCTAAACAAGGGATAAAGGAGTATGTATCAGAAGTAAAGATCATTAGTCGATTGAGACATAGGAACTTGGTCCAACTGATTGGTTGGTGTCATGAGAAAAGAGACCTACTACTTGTTTATGAGTTCATGCCCAATGGCAGCTTAGAGTCTCATATTTTTAGTGAAAGAAGCTTGCTGACTTGGGAGATGAGGTACAAAATCGCTCAAGGGTTGGCATCAGCATTGCTTTATCTTCATGAAGGATGGGAGCAATGTGTACTGCACAGGGATATAAAATCTAGCAACATCATGCTGGATTCAGGTTTTAACGCTAAACTTGGGGATTTTGGACTAGCTAGGCTTGTTGACCACGGAAAGGGATCACAAACCACAGTTTTAGCTGGAACCATGGGCTACATGGCTCCAGAATGTGCCACAACAGGCAAGGCCAGCAAGCAATCCAAAATAGCAAACAAGAATACAAATGATAATGTAGGTGAAATAGACTTACTGCTATTATTTAATCAAATAAGTTATTGA 1641 42.29 MLNVSIPPNHGYLEEWKYCLRSPQFPFPSLFTMISIFFILLMIPSATSLDFNFTSFSPYNDNITYEGSAFPRNQIIQLTQAQSASIGWATYVQPLHLWDKASGNLTDFTTHFSFVIDTQNRSGSHGDGIAFFLMPADSQKPNVTKGGGLGLASDTQPLNTTVNHFVAVEFDIYKNRWDPNDTHAGIDINSVQSIRNVKWWDSIINGRRNDAWISYNSSSKNLSVVFTGFRNDSTILQDNLYYEVDLRLYLPEWVSFGFSGATGNASAIHAIYSWKAETPTSNPNSNPSRKIKVKLVVGLTVGGCAFVGGLSLVLFLFLKSRRGKVDNPVIDQLSMEDDFEKGTGPKKFRYNELASSTNNFAEEGKLGEGGVSSGSKQGIKEYVSEVKIISRLRHRNLVQLIGWCHEKRDLLLVYEFMPNGSLESHIFSERSLLTWEMRYKIAQGLASALLYLHEGWEQCVLHRDIKSSNIMLDSGFNAKLGDFGLARLVDHGKGSQTTVLAGTMGYMAPECATTGKASKQSKIANKNTNDNVGEIDLLLLFNQISY* 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12209634 12212696 - Vvi3g907 Vvi3g907 784582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g907 546 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 276 IPR013320 -
Vvi3g907 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Vvi3g907 546 Gene3D Phosphorylase Kinase; domain 1 368 417 - -
Vvi3g907 546 ProSiteProfiles Protein kinase domain profile. 333 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g907 546 PANTHER - 33 523 - -
Vvi3g907 546 PANTHER RECEPTOR LECTIN KINASE 33 523 - -
Vvi3g907 546 SMART serkin_6 360 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g907 546 Gene3D Transferase(Phosphotransferase) domain 1 418 523 - -
Vvi3g907 546 CDD lectin_legume_LecRK_Arcelin_ConA 49 274 IPR001220 GO:0030246
Vvi3g907 546 ProSitePatterns Legume lectins alpha-chain signature. 250 259 IPR000985 -
Vvi3g907 546 SUPERFAMILY Protein kinase-like (PK-like) 339 519 IPR011009 -
Vvi3g907 546 Pfam Protein kinase domain 378 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g907 546 Gene3D - 47 293 - -
Vvi3g907 546 Pfam Legume lectin domain 48 288 IPR001220 GO:0030246
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g907 - - - vvi:100259008 957.977
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g907 . . . . . . . . Cmo19g00505 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00683 Csa07g00618 . Cme01g00183 . . . . . . . . . . . . Cma19g00488 . Car19g00365 . . . . . . . . . . . . . . . . . . Chy01g00191 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000150 2 7 3 2 2 5 6 4 4 9 8 5 7 10 9 7 6 7 5 4 9 4 4 5 5 9 3 2 3 2 158
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76585 PF00139 Lectin_legB 2.00E-70 CL0004 Vvi PK