Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g909 ATGCCGCGGCAGAAGATTCAGATCAAGAAGATTGACAACACAGCAGCAAGGCAAGTGACCTTCTCAAAGAGGAGAAGAGGGCTTTTTAAGAAAGCACTGGAGCTCTCGACACTGTGTGATGCCGAGATAGAGCTTATTGTCTTCTCAGCAGCAGGAAAGCTCTTTGAGTATTCAAGCTCAAGTGTGAACCAGGTGATTGAAAGGCACAGTCAGCATCCACAGACTCCAGAGAAACCAGAGCCACCATCTCTGGAGCTGCAGCTGGAGAACAGAACCTGTGCAGCCTTGAGCAAAGAAATTGCTCAGCAGACTCAGAGGCTGAGGCAAATGAGAGGAGAAGAGCTCCAGGGATTAAAAATAGAAGAATTGATTGAACTAGAGAAATTACTTGAAGCTGGTCTGTGCAGCGTTGTGGAAGAAAAGGCTGAAAGAATTCAAACAGAGATCAGTGACCTCCAGAGAAAGGGAGACCTGCTGCGGGGAGAGAATGAAAGGTTGAGAAAGTGGATGGAGAATATTTCTGAAGCACAACCTCTTCTTCAACAGGGCCACTCATCTGAATCAATCACAAATAATATTTGCAGCTTATCAGATCCTAATCAAGGCCATCACAACTCTGATACTTCTCTCAAGCTGGGGTTACCATTCTCCAACTGA 657 45.81 MPRQKIQIKKIDNTAARQVTFSKRRRGLFKKALELSTLCDAEIELIVFSAAGKLFEYSSSSVNQVIERHSQHPQTPEKPEPPSLELQLENRTCAALSKEIAQQTQRLRQMRGEELQGLKIEELIELEKLLEAGLCSVVEEKAERIQTEISDLQRKGDLLRGENERLRKWMENISEAQPLLQQGHSSESITNNICSLSDPNQGHHNSDTSLKLGLPFSN* 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12256603 12295018 - Vvi3g909 Vvi3g909 784584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g909 218 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Vvi3g909 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi3g909 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi3g909 218 SUPERFAMILY SRF-like 3 82 IPR036879 GO:0003677|GO:0046983
Vvi3g909 218 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi3g909 218 Coils Coil 135 162 - -
Vvi3g909 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi3g909 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi3g909 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi3g909 218 Pfam K-box region 91 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi3g909 218 Coils Coil 86 113 - -
Vvi3g909 218 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Vvi3g909 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 215 - -
Vvi3g909 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi3g909 218 MobiDBLite consensus disorder prediction 195 218 - -
Vvi3g909 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi3g909 218 PANTHER - 1 215 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14692 PF01486 K-box 9.70E-14 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g909 - - vvi:100252160 402.905