Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g91 ATGACCCTCTGGATCCCAATGGGAACATCACAATTACTTTTGATACTCATAAATGGACAGATGATGGCTATGTGGTTATTGTTTTGGCTCAGGCTCAGCAATTGTTTGTTGCAGGCAAGGGTAACTATCCAAAACTACTATCAGTATCGCCATGTGGAGAAACAGGGTTGGAAGCTAGGATGGACATGGGCCAAGGATGAGGTGATCTGGTCAATGAGTGGAGCCTTTGCGACCCAGCAAGGGAATTGCTCATCCTTCATAGTCCAGACCCCACACTCATGCTTGAAAAACCCTGTCATAGTTGATCTGGAGCCGACTGCTGCACCAGAAAACATGACCGAGGACTGCTGCCATGGTGGCATTCTTTCTGCTTGGGCTATCATTCCTTCCAATTCATTCTCATCCTTTGAGATTATGGTAGGAAACTTGGAGGGGAATACTCATGGCAACAAGCCTCTAAATCTTACTCTAATGGCACCAGGTCCTGGTTACACTTGTAGCCCAATTGAGGATACTGATCCCACAGTTTCTTTAGTTATTGGGGGTAGAAGAGAAATCCAAGTTTTCAGGACATGGAAATCAACTTGCACTTACTCTACCTTTCTGTCCAACAAAGTGCCAGTTTGCTGTGTTTCACTCTCAACATTTTACAGTCCCACCATAACCACATGCCCTCAATGCAGCTGTGGATGCAGAGATGCAAACCCCAGTACAGATTCATGTATTAGGTGTGTTCCTCGCTATCACAGTTGA 753 45.42 MTLWIPMGTSQLLLILINGQMMAMWLLFWLRLSNCLLQARVTIQNYYQYRHVEKQGWKLGWTWAKDEVIWSMSGAFATQQGNCSSFIVQTPHSCLKNPVIVDLEPTAAPENMTEDCCHGGILSAWAIIPSNSFSSFEIMVGNLEGNTHGNKPLNLTLMAPGPGYTCSPIEDTDPTVSLVIGGRREIQVFRTWKSTCTYSTFLSNKVPVCCVSLSTFYSPTITTCPQCSCGCRDANPSTDSCIRCVPRYHS* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 991430 993320 + Vvi3g91 Vvi3g91 783766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g91 250 PANTHER PROTEIN COBRA 18 244 IPR006918 GO:0010215|GO:0031225
Vvi3g91 250 Pfam COBRA-like protein 38 199 IPR006918 GO:0010215|GO:0031225
Vvi3g91 250 PANTHER COBRA-LIKE PROTEIN 18 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g91 - - - vvi:100264075 442.195
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g91 . . Bda06g00512 . . . . Bma12g00957 . . . . . . . . . Bhi05g01752 . . . . . . . . . . . . . Cone12ag1205 Cone8ag1257 . Cone10ag1185 . . . Cme01g01287 . . Bda15g01047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi17g446 ECH 48 448 COBRA Gene Family AT5G60920 81.1 2.9e-210 728.0
Vvi14g1006 ECH 48 435 COBRA Gene Family AT5G60920 82.1 2.3e-207 718.4
Vvi17g445 ECH 554 951 COBRA Gene Family AT5G60920 68.5 2.5e-177 618.6
Vvi14g1005 ECH 31 416 COBRA Gene Family AT5G60920 70.0 7.1e-177 617.1
Vvi12g1128 . 32 422 COBRA Gene Family AT5G60920 53.1 9.5e-129 457.2
Vvi3g92 . 1 154 COBRA Gene Family AT5G60920 51.9 3.6e-43 172.9
Vvi17g446 ECH 17 448 COBRA Gene Family AT3G02210 74.8 3.5e-209 724.5
Vvi14g1006 ECH 20 432 COBRA Gene Family AT3G02210 78.7 8.6e-208 719.9
Vvi14g1005 ECH 2 428 COBRA Gene Family AT3G02210 65.0 8.7e-176 613.6
Vvi17g445 ECH 531 951 COBRA Gene Family AT3G02210 64.0 4.8e-174 607.8
Vvi12g1128 . 18 427 COBRA Gene Family AT3G02210 53.6 9.8e-135 477.2
Vvi3g92 . 1 144 COBRA Gene Family AT3G02210 50.7 1.7e-41 167.5
Vvi14g1006 ECH 21 431 COBRA Gene Family AT3G29810 77.7 1.9e-204 708.8
Vvi17g446 ECH 24 446 COBRA Gene Family AT3G29810 74.7 4.3e-204 707.6
Vvi14g1005 ECH 14 409 COBRA Gene Family AT3G29810 67.8 4.7e-174 607.8
Vvi17g445 ECH 542 931 COBRA Gene Family AT3G29810 66.8 7.5e-172 600.5
Vvi12g1128 . 12 432 COBRA Gene Family AT3G29810 53.9 2.4e-138 489.2
Vvi3g91 . 39 235 COBRA Gene Family AT3G29810 52.0 1.4e-56 217.6
Vvi14g1005 ECH 8 339 COBRA Gene Family AT5G15630 83.4 7.8e-177 616.7
Vvi17g445 ECH 533 860 COBRA Gene Family AT5G15630 80.9 1.4e-170 595.9
Vvi14g1006 ECH 31 360 COBRA Gene Family AT5G15630 71.8 6.9e-149 523.9
Vvi17g446 ECH 30 360 COBRA Gene Family AT5G15630 72.2 3.4e-148 521.5
Vvi14g1006 ECH 19 224 COBRA Gene Family AT5G60950 58.3 2.0e-66 249.2
Vvi17g446 ECH 16 224 COBRA Gene Family AT5G60950 56.9 1.7e-65 246.1
Vvi14g1005 ECH 11 207 COBRA Gene Family AT5G60950 55.6 6.7e-59 224.2
Vvi17g445 ECH 550 730 COBRA Gene Family AT5G60950 57.5 7.5e-58 220.7
Vvi12g1128 . 14 412 COBRA Gene Family AT1G09790 58.2 2.8e-142 502.3
Vvi14g1006 ECH 20 430 COBRA Gene Family AT1G09790 54.1 3.2e-138 488.8
Vvi17g446 ECH 20 431 COBRA Gene Family AT1G09790 54.2 1.3e-136 483.4
Vvi14g1005 ECH 15 412 COBRA Gene Family AT1G09790 52.5 2.9e-131 465.7
Vvi17g445 ECH 31 437 COBRA Gene Family AT1G09790 51.5 9.3e-130 460.7
Vvi3g92 . 1 139 COBRA Gene Family AT1G09790 50.7 9.8e-39 158.3
Vvi5g112 ECH 33 650 COBRA Gene Family AT4G16120 68.6 5.0e-265 910.6
Vvi7g355 ECH 30 646 COBRA Gene Family AT4G16120 62.0 2.3e-233 805.4
Vvi19g458 . 41 640 COBRA Gene Family AT4G16120 55.3 9.0e-214 740.3
Vvi10g25 . 36 625 COBRA Gene Family AT4G16120 54.4 8.5e-204 707.2
Vvi5g112 ECH 4 650 COBRA Gene Family AT3G16860 62.4 4.7e-247 850.9
Vvi7g355 ECH 25 646 COBRA Gene Family AT3G16860 59.6 4.7e-223 771.2
Vvi19g458 . 33 640 COBRA Gene Family AT3G16860 52.8 3.9e-201 698.4
Vvi10g25 . 14 634 COBRA Gene Family AT3G16860 53.0 6.6e-201 697.6
Vvi5g112 ECH 15 637 COBRA Gene Family AT5G49270 62.2 2.3e-241 832.0
Vvi7g355 ECH 32 639 COBRA Gene Family AT5G49270 57.7 3.1e-214 741.9
Vvi10g25 . 31 649 COBRA Gene Family AT5G49270 54.1 6.7e-209 724.2
Vvi19g458 . 8 650 COBRA Gene Family AT5G49270 50.9 8.0e-202 700.7
Vvi19g458 . 1 649 COBRA Gene Family AT3G20580 60.3 4.8e-247 850.9
Vvi10g25 . 33 624 COBRA Gene Family AT3G20580 63.9 1.6e-237 819.3
Vvi5g112 ECH 29 652 COBRA Gene Family AT3G20580 51.8 4.7e-202 701.4
Vvi19g458 . 20 649 COBRA Gene Family AT4G27110 57.8 1.8e-233 805.8
Vvi10g25 . 22 653 COBRA Gene Family AT4G27110 58.5 1.1e-224 776.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008827 2 4 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 0 1 1 0 2 1 1 1 1 1 2 34