Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g918 ATGTCTCATATTATTAAAAGCAGATGCTATTCACTTCAAGGACTCGTCAAGCTTTTGGTAAAGAATGATAAATCATGGCATGCTAGTGTTAATTCTCAAGAAGTTGGCTTAGGTGAGACTAAGGAGTTGGATATAGAAAAGGAAGAAAAACTATCCCAAGAAAAGAAAGGACAAAATTTCCAAGAAAATGAAGGGCAAAACTACCAAGAAAGTTCAACCAACTACAAGTACAAGAAGAGCAATGAAGCTCCATTATTTTTGGCAACAATATCAAACATTCAAGACATTGTTGAAGAAATACTGGTTTGTCATCCTCAAGCACTTGAGCATATTAATAAGGAGGGAATGAACATACTACATGTGGCAATCCTTTACCGTCATATTGAAATTTTTGATATAGTATCAAAATCTGAATTGCTTGCAAGAAGTCTATTATTAGCTACAGATAACAAAGGGAACTCCTTACTACATATGGTTGGCCTAAAAAGAAAAAGTCAAGCTAGTGAAAAGATGCAAAGCCCTGCATCCCAACTACAAAAAGAGTTGCTGTTGTTTAAGAAAGTGAAGTCAGCCTGTAAGATGCATTTGACCAAGCCTCTCAACAAAGATAACCAGACTGCTGAAGAATTATTTGCTGCTAGGAATGAGAGACTCCATCGAGATGCCAAGGAATGGCTAATGCGCACCACTGAGAATTGCACCATTCTTTCTATTTTCATAGCCACTGTTGCCTTTGCAGCAGCCTACACGGTACCAGGAGGTCCTAATCAAAACACTGGTATTCCAATCCTTAACTCTAAACCCTTCTTTTTGGTTTTCATATTAGCTGATGTGTTCTCCCTCACTTTGGCTTTGACATCTGTGGGTATATTTCTCTCCATCCTTACATCCTCATTTCCACTACAAGACTTCGAAACATATCTTTTTAAGAAGCTGACACAGGGAATTATATGTATGATCCTCTCGGTCTCAATGATGGCGGTGGCATTTGGAGCAACAATCATCCTGATCATGATGACACATAATTGGAAAAATGCTGTTTGGAGTGTGGTTGGATTTCTTCCTGTCCCCATTTTTTTTCTCTCATATTCACCTCTACGTTCAGCAGTCCTGGGACGTTGCACAGAATCTTCCAAATATTTTGTTGCAAAATTCCTCAAAGGTGTTGCCATTGGGGTTGCAATATTCGTCTTTGTCCTCTTTTATTGTTTATATCTAGCTTTCAAAGGACTGTTCTGGACCGTGAAAAAGGCTTTTGAGTTTATTATATGTAAACCTGTTCGTTGGATTTGTGGGAATAAATCCGATACCCAATCTCCACAGCCAACTGCAGCTCCTATTACTCAAGTTTGA 1353 38.51 MSHIIKSRCYSLQGLVKLLVKNDKSWHASVNSQEVGLGETKELDIEKEEKLSQEKKGQNFQENEGQNYQESSTNYKYKKSNEAPLFLATISNIQDIVEEILVCHPQALEHINKEGMNILHVAILYRHIEIFDIVSKSELLARSLLLATDNKGNSLLHMVGLKRKSQASEKMQSPASQLQKELLLFKKVKSACKMHLTKPLNKDNQTAEELFAARNERLHRDAKEWLMRTTENCTILSIFIATVAFAAAYTVPGGPNQNTGIPILNSKPFFLVFILADVFSLTLALTSVGIFLSILTSSFPLQDFETYLFKKLTQGIICMILSVSMMAVAFGATIILIMMTHNWKNAVWSVVGFLPVPIFFLSYSPLRSAVLGRCTESSKYFVAKFLKGVAIGVAIFVFVLFYCLYLAFKGLFWTVKKAFEFIICKPVRWICGNKSDTQSPQPTAAPITQV* 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12630163 12638121 - Vvi3g918 Vvi3g918 784593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g918 450 Gene3D - 10 173 IPR036770 -
Vvi3g918 450 Pfam Domain of unknown function 223 335 IPR026961 -
Vvi3g918 450 PANTHER ANKYRIN-3-LIKE 39 421 - -
Vvi3g918 450 MobiDBLite consensus disorder prediction 48 72 - -
Vvi3g918 450 PANTHER CASKIN 39 421 - -
Vvi3g918 450 SUPERFAMILY Ankyrin repeat 72 158 IPR036770 -
Vvi3g918 450 MobiDBLite consensus disorder prediction 58 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g918 - - - vvi:104878893 877.085
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g918 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014782 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8