Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g920 ATGGCCGACACCAACTCTACCGACCAACAGGAACTCCAAGATCAATTGTTCATTCACTTGATCAGCAAAGACGACAAGAAGGTGACCCAACTCTGCAGTTCTCATCGTGAAGGCCCGCTACAGAGAATTAGTGTTTACAATGACACAGTCCTCCACATGGCCTCTCGCTTCAAACGAAGTAAACTGGTGCGCGACTTACTGGAAATGTTGCCTAAAGAACGCAACCATGAACTTGCCGCTACAAAAAACAACGCCGGCAGCAATATACTCCACGAAGTAGCGGCCAGTGATACTATGAAAGATGTGGCGGAGGAGATGTTGAAGAGAGATTCAGAGTTGCTAATTGCGCCTAACGACTTAGGAGAGACGCCTATTTTTTGTGCAGCCCGCTACGGCCAAACTGAAATGTTTAAGTTTCTGGCTGGGAAAATGGGACTAACGGAACTAAATCCAGAAGAGGGTAAACACTATTTGCAGAGGGATGATAGAACAACAGTTCTTCATATTTCCATCTTGACCGAGTGTTTTGAATTGGCCCATTTTATTGCGGAGAGCTACTCATATTTAATTGAAGAAAGAGATCCAGATTCAATGACTGCTCTTCAATATCTTGCATGCAATCCAACTGCATTTGAAAAGAAGAAAATAAAAACAAGACGAGGATTCATGGAGGAACTCATGATCTCAACAGTACCAACACAAGGACTCATGGAGATACTCATTAAATCCAAGTGGCCCCCCAAGGATAACAGCAAGACAAGTGATGAGAGATGCTATTCACTTCAAGGACTCGTCAAGCTTTTGGTAAAGAATGATACATCATGGCATCCTAGTGTTAATTCTCAAGAAGTTGGCTTAGGTGAGACTAAGGAGTTGGATATAGAAAAGGAAGAAAAAATATCCCAAGAAAAGAAAGGCCAAAATTTCCAAGAAAATGAAGGGCAAAACTACCAAGAAAGTTCAACCAACTACAAGTACAAGAAGAGCGATGAAGCTCCATTATTTTTGGCAACAATATCAAACATTCAAGACATTGTTGAAGAAATACTGGTTTGTCATCCTCAAGCACTTGAGCATACTAATAAGGAGGGAATGAACATACTACATGTGGCAATCCTTTACCGTCATATTGAAATTTTTGATATAGTATCAAAATCTGAATTGCTTGCAAGAAGTCTATTATCAGCTATAGATAAAAAAGGGAACTCCTTACTACATATGGTTGGCCTAAAAAGAAAAAGTCAAGCTAGTGAAAAGATGCAAAGCCCTGCATCCCAACTACAAAAAGAGTTGCTGTTGTTTAAGAAAGTGAAGTCAGCCTGTAAGATGCATTTGACCAAGCCTCTCAACAAAGATAACCAGACTGCTGAAGAATTATTTGCTGCTAGGAATGAGAGACTCCATCGAGATGCCAAGGAATGGCTAATGCGCACCACTGAGAATTGCACCATTCTTTCTATTTTCATAGCCACTGTTGCCTTTGCAGCAGCCTACACGGTACCAGGAGGTCCTAATCAAGACACCGGTATTCCAATCCTTAACTCTAAACCCTTCTTTGTGGTTTTCATATTAGCTGATGTGTTCTCCCTCACTTTGGCTTTGACATCTGTGGGTAAATTTCTCTCCATCCTTACATCCTCATTTCCACTACAAGACTTCGAAACATATCTTTTTAAGAAGCTGACACAGGGAATTATATGTATGATCCTCTCGGTCTCAATGATGGCGGTGGCGTTTGGAGCAACAATCATCCTGATCATGATGACACATAATTGGAAAAATGCTGTTTGGAGTGTGGTTGGATTTCTTCCTGTCCCCATTTTTTTTCTCTCATATTCACCTCTACGTTCAGCAGTCCTGAGATGTTGCACAGAATCTGCCAAATGTTTTGTTGCAAAATTCCTCAAAGGTGTTGCAATATTCGTCGTTGTCCTCTTTTATTGTTTATATCTAGCTTTCAAAGGACTGTTCTGGACCGTGAAAAAGGCTTTTCGTTGGATTTGTGGGAATAAATCCGATACCCAATCTCCACAGCCAACTGCAGCTCCTATTACTCAAGTTTGA 2064 41.04 MADTNSTDQQELQDQLFIHLISKDDKKVTQLCSSHREGPLQRISVYNDTVLHMASRFKRSKLVRDLLEMLPKERNHELAATKNNAGSNILHEVAASDTMKDVAEEMLKRDSELLIAPNDLGETPIFCAARYGQTEMFKFLAGKMGLTELNPEEGKHYLQRDDRTTVLHISILTECFELAHFIAESYSYLIEERDPDSMTALQYLACNPTAFEKKKIKTRRGFMEELMISTVPTQGLMEILIKSKWPPKDNSKTSDERCYSLQGLVKLLVKNDTSWHPSVNSQEVGLGETKELDIEKEEKISQEKKGQNFQENEGQNYQESSTNYKYKKSDEAPLFLATISNIQDIVEEILVCHPQALEHTNKEGMNILHVAILYRHIEIFDIVSKSELLARSLLSAIDKKGNSLLHMVGLKRKSQASEKMQSPASQLQKELLLFKKVKSACKMHLTKPLNKDNQTAEELFAARNERLHRDAKEWLMRTTENCTILSIFIATVAFAAAYTVPGGPNQDTGIPILNSKPFFVVFILADVFSLTLALTSVGKFLSILTSSFPLQDFETYLFKKLTQGIICMILSVSMMAVAFGATIILIMMTHNWKNAVWSVVGFLPVPIFFLSYSPLRSAVLRCCTESAKCFVAKFLKGVAIFVVVLFYCLYLAFKGLFWTVKKAFRWICGNKSDTQSPQPTAAPITQV* 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12780417 12803911 - Vvi3g920 Vvi3g920 784595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g920 687 PANTHER CASKIN 122 664 - -
Vvi3g920 687 SMART ANK_2a 363 392 IPR002110 GO:0005515
Vvi3g920 687 SMART ANK_2a 120 149 IPR002110 GO:0005515
Vvi3g920 687 SMART ANK_2a 85 115 IPR002110 GO:0005515
Vvi3g920 687 SMART ANK_2a 46 76 IPR002110 GO:0005515
Vvi3g920 687 MobiDBLite consensus disorder prediction 298 321 - -
Vvi3g920 687 Gene3D - 6 276 IPR036770 -
Vvi3g920 687 SUPERFAMILY Ankyrin repeat 21 386 IPR036770 -
Vvi3g920 687 MobiDBLite consensus disorder prediction 307 321 - -
Vvi3g920 687 PANTHER ANKYRIN-3-LIKE 122 664 - -
Vvi3g920 687 Pfam Domain of unknown function 472 584 IPR026961 -
Vvi3g920 687 Gene3D - 295 473 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g920 - - - vvi:100266905 1353.58
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g920 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014782 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8