Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g924 ATGTCTAGACTCCTCCTCCTCTATTTTCTTTTCTTACTCTTGTCCTCTCAGATTCTTTCCTCCTCTTTCTCTTTCTCTAATTCCACCAAACTATGCCCGCATCACCAGACCCTTGCTCTACTCCACCTTAAGCAATCATTCTCTATCAACAATTCTAGTTCTTTGGATTGCCATGCCGTTGGTGTCACGTCTTATCCCAAAACAGAGTCTTGGAAGAAGGGCAGTGATTGCTGCTCATGGGATGGGGTCACATGTGATTGGGTGACAGGCCATGTAATTGAACTGGACCTCAGTTGCAGTTGGCTCTTTGGCACCATCCATTCCAACACTACCCTCTTCCTCCTTCCTCATATACAAAGGCTCAACCTGGCTTTCAACAACTTTAGTGGGTCCTCTATTTCAGTTGGGTTTGGTCGGTTCTCAAGCTTGACGCATCTCAATCTCTCTGACTCTGGATTTTCAGGCCTAATTTCACCAGAAATATCTCACCTCTCCAACTTGTTGCAAAAGCTTCACCTTGGAGGTATATCCATCTCTTCAAACAATTCCCTTACGGAAAATTTAATTTCAATAGGGTTATCTAACAACCATTTTAGTGTCATTCCTTCTCATGTGAATGAGTTTTTATTTTCAAAGATGATTGATTTGAGTATGAATGAGTTACATGGGCCAATTCCAAGTTCAATATTTAAGCTTATTGAGAGCATAGACCTTTCAAACAATAAGATTAGTGGAGTATGGTCGTGGAATATGGGAAAGGATACACTGTGGTACTTGAATCTTTCTTACAACTCGATAAGTGGTGGAGGAATCTCACCTTTGATTTGCAAAGTGAGTTCCATCAGAGTTCTTGATTTGTCTAGTAACAACTTGAGTGGGATGCTTCCTCATTGTTTGGGGAATTTTAGCAAAGATCTATCTGTTTTGAATCTACGAAGGAATCGATTTCATGGCACCATTCCTCAATCATTTTTAAAGGGCAATGTTATCAGGAATCTTGACTTCAATGATAATCGATTGGAAGGCCTAGTACCTCGATCTTTGATCATTTGTAGAAAACTTGAAGTTCTAAACCTTGGGAATAATAAGATAAATGATACATTTCCCCATTGGTTGGGTACTCTTCCAGAGTTGCAAGTCCTTGTTTTGCGCTCTAATAGTTTCCATGGTCATATAGGGTGTTCCAAACTCAAATCCCCATTCATGAGCCTAAGAATCATTGATCTTGCTCACAATGATTTCGAGGGTGACTTGCCTGAAATGTATTTGAGAAGTTTGAAAGTAACAATGAATGTAGATGAAGACAACATGACCAGAAAATATATGGGGGGTAATTATTATGAAGATTCCGTAATGGTGACAATCAAGGGGTTGGAGATTGAATTTGTGAAAATCTTGAATGCTTTCGCAACAATTGATTTATCGAGCAACAAATTCCAAGGAGAGATTCCACAGTCCATTGGCAATCTTAATTCACTTCGAGGGCTCAATTTATCTCATAACAACCTTACAGGACACATTCCATCATCTTTCGGAAATTTGAAGTTGCTTGAATCACTGGACCTCTCTTCAAACAAGCTAATTGGGAGTATTCCTCAACAATTAACAAGTTTAATATTTCTTGAAGTTTTGAATCTTTCCCAAAACCATCTCACTGGATTTATACCTAAAGGTAACCAGTTTGACACTTTTGGAAATGATTCATACAACGGGAACTCAGAGTTGTGTGGATTTCCATTGTCAAAGAAATGCATAGCTGATGAAACACCGGAGCCTTCAAAAGAAGAAGATGCAGAGTTTGAAAATAAATTTGATTGGAAATTCATGTTGGTGGGATATGGATGTGGATTGGTGTATGGATTGTCTCTTGGGGGTATCATTTTTTTAATTGGGAAACCTAAATGGTTTGAAATTCATCGACCTGCTTTCTTTTTGGAGCAATCATTCTCTATCAACAATTCTAGTTCTTCGGATTGCCATTATAATGGTGTCATGTCTTATCCCAAAACAGAGTCTTGGAAGAAGGGTAGTGATTGCTGCTCATGGGATGGGGTCGCCTATGATAAGGTGACAGGCCATGTAATTGGGTTGGACCTCGGTTGCAGCTGGCTCTTTGGCATCATCCATTCCAATAGTACCCTTTTCCTCTTTCCCCACCTGCGAAGGCTCAACCTTGCTTCCAATGACTTCAATGGGTTTTCTATTTCAACTGGGTTTGGCCGCTTCTCAACTTTGACGCGTCTCAACCTCTCCTACTATGTATTTTCTGGAAAAATTGCACCTGAAATCTTCCACCTCTCCAACTTGTTTCACTTTATCTATTTGGGAATTATAGAGCAGAATTTGCCCCGCATGACTTCAATTCTCTGGATTGTGGGCGAAGTCGGTGCCAAGATCCGAGTCTTAGACTTCATTTCTCCTGATGTCCAGGTCAGCTATTTTTTCTGCTAG 2451 40.11 MSRLLLLYFLFLLLSSQILSSSFSFSNSTKLCPHHQTLALLHLKQSFSINNSSSLDCHAVGVTSYPKTESWKKGSDCCSWDGVTCDWVTGHVIELDLSCSWLFGTIHSNTTLFLLPHIQRLNLAFNNFSGSSISVGFGRFSSLTHLNLSDSGFSGLISPEISHLSNLLQKLHLGGISISSNNSLTENLISIGLSNNHFSVIPSHVNEFLFSKMIDLSMNELHGPIPSSIFKLIESIDLSNNKISGVWSWNMGKDTLWYLNLSYNSISGGGISPLICKVSSIRVLDLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQSFLKGNVIRNLDFNDNRLEGLVPRSLIICRKLEVLNLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKLKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKVTMNVDEDNMTRKYMGGNYYEDSVMVTIKGLEIEFVKILNAFATIDLSSNKFQGEIPQSIGNLNSLRGLNLSHNNLTGHIPSSFGNLKLLESLDLSSNKLIGSIPQQLTSLIFLEVLNLSQNHLTGFIPKGNQFDTFGNDSYNGNSELCGFPLSKKCIADETPEPSKEEDAEFENKFDWKFMLVGYGCGLVYGLSLGGIIFLIGKPKWFEIHRPAFFLEQSFSINNSSSSDCHYNGVMSYPKTESWKKGSDCCSWDGVAYDKVTGHVIGLDLGCSWLFGIIHSNSTLFLFPHLRRLNLASNDFNGFSISTGFGRFSTLTRLNLSYYVFSGKIAPEIFHLSNLFHFIYLGIIEQNLPRMTSILWIVGEVGAKIRVLDFISPDVQVSYFFC* 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12887816 12920590 - Vvi3g924 Vvi3g924 784599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g924 816 Pfam Leucine Rich Repeat 281 302 IPR001611 GO:0005515
Vvi3g924 816 Gene3D Ribonuclease Inhibitor 29 138 IPR032675 -
Vvi3g924 816 SUPERFAMILY L domain-like 674 773 - -
Vvi3g924 816 Pfam Leucine rich repeat N-terminal domain 668 685 IPR013210 -
Vvi3g924 816 Pfam Leucine rich repeat N-terminal domain 34 86 IPR013210 -
Vvi3g924 816 SMART LRR_typ_2 185 208 IPR003591 -
Vvi3g924 816 SMART LRR_typ_2 717 740 IPR003591 -
Vvi3g924 816 SMART LRR_typ_2 514 538 IPR003591 -
Vvi3g924 816 SMART LRR_typ_2 115 140 IPR003591 -
Vvi3g924 816 SMART LRR_typ_2 351 375 IPR003591 -
Vvi3g924 816 SMART LRR_typ_2 278 301 IPR003591 -
Vvi3g924 816 SMART LRR_typ_2 490 513 IPR003591 -
Vvi3g924 816 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 656 772 IPR045273 -
Vvi3g924 816 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 45 267 IPR045273 -
Vvi3g924 816 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 263 630 IPR045273 -
Vvi3g924 816 Gene3D Ribonuclease Inhibitor 141 587 IPR032675 -
Vvi3g924 816 PANTHER RECEPTOR-LIKE PROTEIN 263 630 - -
Vvi3g924 816 PANTHER RECEPTOR-LIKE PROTEIN 45 267 - -
Vvi3g924 816 PANTHER RECEPTOR-LIKE PROTEIN 656 772 - -
Vvi3g924 816 Pfam Leucine rich repeat 471 527 IPR001611 GO:0005515
Vvi3g924 816 Pfam Leucine rich repeat 331 387 IPR001611 GO:0005515
Vvi3g924 816 SUPERFAMILY L domain-like 215 581 - -
Vvi3g924 816 PRINTS Leucine-rich repeat signature 281 294 - -
Vvi3g924 816 PRINTS Leucine-rich repeat signature 514 527 - -
Vvi3g924 816 SUPERFAMILY L domain-like 70 246 - -
Vvi3g924 816 Gene3D Ribonuclease Inhibitor 651 775 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g924 - - - vri:117905855 834.713
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g924 Vvi18g1743 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g924 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000755 0 0 0 0 0 3 1 3 4 4 2 3 2 4 7 2 3 9 0 2 11 1 3 5 3 2 4 3 1 7 89