Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g947 ATGATTCCAATTGAGGTTCAAGGAAGTGATTTGTTTAAGGTTCTCTTGCGAAGCAAGGATGGATCCTTAGAATTTACAAATAGAGAGATCCAAAGTAAACTTACACAAATCACTTTATTGCACCTCAATGGGAATCATTTTAGTGGTAAAATTCCAAGTGTTTTTAATAACCTTAGAAATTTAATTTCATTATCTATTTCTAGAAACAATTTTAGTGGGCAGCTTCCACCATCAATTGGAAATCTAACAAACCTTCAGGAGTTAGGCTTCTCTCATAACTTTAACTTGTTCAATGAGACAATACCATCTTGGTTGTATACTTTACCATCATTGGTAATATTAGATCTCAGTCATAACAAACTCACAGGACATATTGGTGAGTTCCAATTTGATTCATTGAAGTATGAATATCTTAATTCCAACTTGCTGCAAGGACCACTTCCAAATCCTCCAAATTCTACATTTTTCTTTTCAGTTTCCCATAACAAATTAAGTGGAGAAATCTCATCGTTGATTTGCAAAGCGAGTTCCATGGGAATTCTTGATTTGTCTAATAACAACTTGAGTGGAATGCTTCCTCATTGTTTGGGGAATTTTAGCAAAGATTTCTTTGACATATCCAAATCTTTTGGGAATTTGAAGTTGCTTGAATCATTGGACTTCTCTTCGAACAAGTTTATTGGGAGAATTTCGCAAGAATTAACAAGTTCAATATTTCTTGAAAAAGAAAAAAATTGGAGTACGCGTGTGTTGCCAAGAATTATACCTCGAGGCAATCACTTTGAGACATTTGGAAATGATTCATACAATGGGAACTCAGGGTTATGTGGATTTCATTATCGAAGAAATGCATAG 855 34.04 MIPIEVQGSDLFKVLLRSKDGSLEFTNREIQSKLTQITLLHLNGNHFSGKIPSVFNNLRNLISLSISRNNFSGQLPPSIGNLTNLQELGFSHNFNLFNETIPSWLYTLPSLVILDLSHNKLTGHIGEFQFDSLKYEYLNSNLLQGPLPNPPNSTFFFSVSHNKLSGEISSLICKASSMGILDLSNNNLSGMLPHCLGNFSKDFFDISKSFGNLKLLESLDFSSNKFIGRISQELTSSIFLEKEKNWSTRVLPRIIPRGNHFETFGNDSYNGNSGLCGFHYRRNA* 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14136487 14155287 + Vvi3g947 Vvi3g947 784622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g947 284 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 28 93 IPR045273 -
Vvi3g947 284 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 150 202 IPR045273 -
Vvi3g947 284 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 205 282 IPR045273 -
Vvi3g947 284 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 92 149 IPR045273 -
Vvi3g947 284 Pfam Leucine rich repeat 36 93 IPR001611 GO:0005515
Vvi3g947 284 SUPERFAMILY L domain-like 31 242 - -
Vvi3g947 284 Gene3D Ribonuclease Inhibitor 22 284 IPR032675 -
Vvi3g947 284 PANTHER RECEPTOR-LIKE PROTEIN 28 93 - -
Vvi3g947 284 PANTHER RECEPTOR-LIKE PROTEIN 150 202 - -
Vvi3g947 284 PANTHER RECEPTOR-LIKE PROTEIN 92 149 - -
Vvi3g947 284 PANTHER RECEPTOR-LIKE PROTEIN 205 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g947 - - - vvi:100256900 186.037
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g947 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .