Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g948 ATGTCTCATATTACTGAAAGCAGATTCTATTCACTTCAAGGACTCGTTAAGCTTTTGGTAAAGAATGATACATCATGGCATGCTAGTGTTAATTCTCAAGAAGTTGGCTTAAGTGAGACTAAGGAGTTAGATATAGAAAAGGAAGAAAAAATATCCCAAGAAATTGAAGGACAAAACTCCCAAGAAAAGAAAGGACAAAATTTTCAAGAAAATGAAGGGCGAAACTACCAAGAAAGTTCAACCAACTACAAGTACAAGAAGAGCGATGAAGCTCCATTATTTTTGGCAACAATGTCAAACATTCAAGACATTGTTGAAGAAACATTGGTTTGTCATCCTCAAGCGCTTGAGCATATTAATAAGGAGGGAATGAACATACTACATGTGGCAATCCTTCACCGTCATATTGAAATTTTTGATGTAGTGGCAAAATCTGAATTGCTTGCAAGAAGTCTATTATCAGCTACAGATAACAAAGGGAACTCCTTATTACATATGGTTGGCCTAAAAAGAAAAAGTCAAGCTAGTGAAAAGATGCAAAGCCCTGCATTCCAGCTACAAAAAGAGTTGCTGTTGTTTAAGAAAGTGAAGTCAGCCTGTAAGATGCATTTGACCAAGCCTCTCAACAAAGATAACCAGACTGCTGAAGAATTATTTGCTGCTAGGAATGAGAGACTCCATCGAGATGCCAAGGAATGGCTAATGCGCACCACTGAGAATTGCACCATTCTTTCTGTTTTCATAGCCACTGTCGCCTTTGCAGCAGCCTACACGGTACCAGGAGGTCCTAATCAAGACACCGGTATTCCAATCCTTAACTCTAAACCCTTGTTTGTGGTTTTCATATTAGCTGATGTGTTCTCCCTCACTTTGGCTTTGACAACTGTGGGTATATTTCTCTCCATCCTTACATCCTCATTTCCACTACAAGACTTCGAAACATATCTTTTTAAGAAGCTGACACAGGGAATTATATGTATGATCCTCTCGGTCTCAATGATGGCGGTGGCGTTTGGAGCAACAATCATCCTGATCATGATGACACATAATTGGAAAAATGCTGTTTGGAGTGTGGTTGGATTTCTTCCTGTCCCCATTTTTTTTCTCTCATATTCACCTCTACGTTCAGCAGTCCTGGGACGTTGCACAGAATCTTCCAAAAATTTTGTTGCAAAATTCCTCAAAGGTGTTGCCATTGGGGTTGGAATATTCGTCTTTGTCCTCTTTTATTGTTTATATCTAGCTTTCAAAGGACTGTTCTGGACCGTGAAAAAGGCTTTTGGTTGGATTTGTGGGAATAAATCCGATACCCAATCTCCACAGCCAACTGCAGCTCCAATTACTCAAGTTTGA 1353 39.54 MSHITESRFYSLQGLVKLLVKNDTSWHASVNSQEVGLSETKELDIEKEEKISQEIEGQNSQEKKGQNFQENEGRNYQESSTNYKYKKSDEAPLFLATMSNIQDIVEETLVCHPQALEHINKEGMNILHVAILHRHIEIFDVVAKSELLARSLLSATDNKGNSLLHMVGLKRKSQASEKMQSPAFQLQKELLLFKKVKSACKMHLTKPLNKDNQTAEELFAARNERLHRDAKEWLMRTTENCTILSVFIATVAFAAAYTVPGGPNQDTGIPILNSKPLFVVFILADVFSLTLALTTVGIFLSILTSSFPLQDFETYLFKKLTQGIICMILSVSMMAVAFGATIILIMMTHNWKNAVWSVVGFLPVPIFFLSYSPLRSAVLGRCTESSKNFVAKFLKGVAIGVGIFVFVLFYCLYLAFKGLFWTVKKAFGWICGNKSDTQSPQPTAAPITQV* 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14204862 14212245 + Vvi3g948 Vvi3g948 784623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g948 450 PANTHER ANKYRIN-3-LIKE 12 427 - -
Vvi3g948 450 Gene3D - 12 228 IPR036770 -
Vvi3g948 450 PANTHER CASKIN 12 427 - -
Vvi3g948 450 MobiDBLite consensus disorder prediction 58 81 - -
Vvi3g948 450 SUPERFAMILY Ankyrin repeat 81 166 IPR036770 -
Vvi3g948 450 MobiDBLite consensus disorder prediction 53 81 - -
Vvi3g948 450 Pfam Domain of unknown function 231 343 IPR026961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g948 - - - vvi:100852868 849.736
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g948 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014782 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8