Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g951 ATGGCTTCAGAGAAGAAACTCTCAAACCCAATGAGGGACATCAAGGCCCAGAAGCTCGTCCTCAACATCTCCATTGGAGAAAGTGGAGATCGCCTCACCAGAGCCGCTAAGATACACTCAATGCAGCTTCTTGAGAGTGGTTTGAAGGTCAAGGAATATGAGTTGCTGTTGAGGTCACTGGAGGGCTTTAAATTCCTTTCCACCCAGGGAGAGAGGACAAGCCGGAGCCACCACCTGAGGGTCGTCTACCAGATGTGCCACAAGGAGCGCTCTGGATTTGAAGGACCTTGGACTTCCAATCCTCTGATCTTTGATAACAGCTACTTCACGGAACTCCTTGGCGAAGAAAAGGAAGGTCTTCTATAG 366 49.73 MASEKKLSNPMRDIKAQKLVLNISIGESGDRLTRAAKIHSMQLLESGLKVKEYELLLRSLEGFKFLSTQGERTSRSHHLRVVYQMCHKERSGFEGPWTSNPLIFDNSYFTELLGEEKEGLL* 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14310743 14311619 - Vvi3g951 Vvi3g951 784626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g951 121 PANTHER 60S RIBOSOMAL PROTEIN L11 39 61 - -
Vvi3g951 121 PANTHER 60S RIBOSOMAL PROTEIN L11 1 38 - -
Vvi3g951 121 Gene3D Peroxidase, domain 2 70 120 - -
Vvi3g951 121 Gene3D - 3 51 IPR022803 -
Vvi3g951 121 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 1 38 IPR002132 GO:0003735|GO:0005840|GO:0006412
Vvi3g951 121 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 39 61 IPR002132 GO:0003735|GO:0005840|GO:0006412
Vvi3g951 121 SUPERFAMILY Heme-dependent peroxidases 85 116 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g951 K02868 RP-L11e, RPL11; large subunit ribosomal protein L11e - vvi:100246959 151.369
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g951 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .