Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g955 ATGCCCTCAAAAGCCCTGTTCTTTTTCGTCCAAAAAAGAAATTCTTATGCCACTTTTGTCCCCATCGTCCTCATCCAGCGGAGAAGAGAAAGTGAGAGAAAAGCAATGGAAGGCAACAGAGCAGTGGAGGCAGAGAGATGGCTGAGCATCGCCGAGAAGCTCCTTGCCGCACGTGACTTGCAGGGCTGCAAAACGTTTGCCATCCGCGCCCGAGAATCTGACCCCAGACAGGTTCGTTTCTCCGACCAGATCCTTGCTGTAGCCGACGCCCTCATCGCCGGCGAGGCCCGGATCAACAACCAGAACGACTGGTACGCCATTCTCCAGCTCTCTCGTCGTACCCAAGACCCCGAACTCGTCGCCACCCAGTACCGGCGTCTCGCTCTGCTCCTGAACCCGGATCAGAATCGCTTGCCCTTCGCTGATCAGGCCTTCAGGCTTGTCGCGGACGCCTGGTCGGTTCTGTCGAACCAGGCGAAGAAGGCTCTGTACGATGACGAACTCAGTCTTTTAAAACTCGATCCGAGCGCCGATTCGGCTCAACCGGCTCGGACGCCTCGAACGACTGAGCCGACTCAGTCTCTGGGTCCGTGTTTCTGGACTGCGTGTCCCTACTGCTACAATCTGTATGAGTACCCTAGGGTGTACGAAGAGTGTGTCCTGCGATGCCAGAACTGTCAGAGGGCATTTCACGCCGTGAGGATCCCGTCTCCGCCAGCGGTCGGCGATGGCAAGGATGGATACTTTTGTTGTTGGGGTTTTTTCCCATTAGGGTTTTCTGTGAACCCTCCTGAAAATGCTAAAACGACAGGCGGCTACTCTAATTGGGTGCCGTTTTCTCCAATGTTCGCTTGCCCTTCGCAGTATGAAGAACTAAAAGTCCTGTGGCACGGCGGAGCATTAAGAAGGCGAAGAGCAGCCCACAAGGTTTGTTGGCTGTGGAAGAAGGGTGTGAAGGAGTTGGGGAAGTTGGATTTGAATGTGGAATTTAGTAATGAGGTGGAAGAGGCGGCAGTGGGAATAAGTGAAGGGAATGGGGAGGAGGATAACATTGAAGGGATTAGTTTTTTTGAGGGTCTTGATGAGTTTCTGAGTAGTCTGCCTATACTTTCTGTTGTGGGCGATGACAAGGTTAAGGCGGCTTAG 1146 53.49 MPSKALFFFVQKRNSYATFVPIVLIQRRRESERKAMEGNRAVEAERWLSIAEKLLAARDLQGCKTFAIRARESDPRQVRFSDQILAVADALIAGEARINNQNDWYAILQLSRRTQDPELVATQYRRLALLLNPDQNRLPFADQAFRLVADAWSVLSNQAKKALYDDELSLLKLDPSADSAQPARTPRTTEPTQSLGPCFWTACPYCYNLYEYPRVYEECVLRCQNCQRAFHAVRIPSPPAVGDGKDGYFCCWGFFPLGFSVNPPENAKTTGGYSNWVPFSPMFACPSQYEELKVLWHGGALRRRRAAHKVCWLWKKGVKELGKLDLNVEFSNEVEEAAVGISEGNGEEDNIEGISFFEGLDEFLSSLPILSVVGDDKVKAA* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14578245 14585659 - Vvi3g955 Vvi3g955 784630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g955 381 Gene3D DnaJ domain 92 181 IPR036869 -
Vvi3g955 381 PANTHER BNAANNG15130D PROTEIN 315 381 - -
Vvi3g955 381 PANTHER BNAANNG15130D PROTEIN 36 181 - -
Vvi3g955 381 PANTHER BNAANNG15130D PROTEIN 185 291 - -
Vvi3g955 381 ProSitePatterns Nt-dnaJ domain signature. 145 164 IPR018253 -
Vvi3g955 381 Pfam DnaJ domain 103 165 IPR001623 -
Vvi3g955 381 CDD PHD_SF 203 250 - -
Vvi3g955 381 ProSiteProfiles dnaJ domain profile. 103 168 IPR001623 -
Vvi3g955 381 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 185 291 - -
Vvi3g955 381 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 315 381 - -
Vvi3g955 381 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 36 181 - -
Vvi3g955 381 SMART dnaj_3 102 160 IPR001623 -
Vvi3g955 381 CDD DnaJ 103 157 IPR001623 -
Vvi3g955 381 SUPERFAMILY Chaperone J-domain 98 167 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g955 - - - vvi:100253681 588.571
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g955 . . . . . . . Bma12g00378 Cmo19g00493 Cmo11g01464 . . . . . Cpe04g00370 Cpe15g00374 Bhi05g00935 . . . . . . . . . . . . . . . . . . . . Cme01g00203 . . Bda15g00491 . . . . . . . . Cma11g01667 Cma19g00476 Car11g01178 Car19g00351 . . . . . . . . . Cla09g01575 Cam09g1578 Cec09g1732 Cco09g1794 . . Cre09g1623 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi18g508 ECH 1 287 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 57.3 4.1e-88 322.0
Vvi3g955 . 43 284 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 51.6 1.2e-63 240.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009723 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 32