Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g956 ATGGCGCGGCAGAAGATTCAGATCAAGAAGATTGACAACACAGCAGCAAGGCAAGTGACCTTCTCAAAGAGGAGAAGAGGGCTTTTTAAGAAAGCACAGGAGCTCTCAACACTGTGTGACGCTGAGATAGCGCTTATTGTCTTCTCAGCAGCAGGAAAGCTCTTTGAGTATTCAAGCTCAAGTGTGAGCCAGGTGATTGAAAGGCACAATCAGCATCCACAGACTCCAGAGAAACCAGAACCACCATCTCTGGAGCTGCAGCTGGAGAACAGCACCTGTGCAGCCTTGAGCAAAGAAATTGCCCAGCAGACTCAGAGGCTGAGGCAAATGAAAGGAGAAGAGCTCCAGGGATTAAAAATAGAAGAATTGATTGAACTAGAGGAATTACTTGAAGCTGGTCTGTGCAGCGTCGTGGAAGAAAAGGCTGAAAGAATTCGAACAGAGATCAGTGACCTCCAGAGAAAGGGAGACCTGCTGCGGGAAGAGAATGAAAGGTTGAGAAAGGAGGTGGAGAATATTTCTGAAGCACCTCTCCTTCAACAGGGCCACTCATCTGAATCAATCACAACTAATATTTGCAGCTTATCAGATCCTAATCAAGGCCTTCACAACTCTGATACTTCTCTCAAGCTGGGGTTACCATTCTCCAACTGA 654 46.64 MARQKIQIKKIDNTAARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSAAGKLFEYSSSSVSQVIERHNQHPQTPEKPEPPSLELQLENSTCAALSKEIAQQTQRLRQMKGEELQGLKIEELIELEELLEAGLCSVVEEKAERIRTEISDLQRKGDLLREENERLRKEVENISEAPLLQQGHSSESITTNICSLSDPNQGLHNSDTSLKLGLPFSN* 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14652186 14683330 - Vvi3g956 Vvi3g956 784631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g956 217 Pfam K-box region 92 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi3g956 217 Coils Coil 93 113 - -
Vvi3g956 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi3g956 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi3g956 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi3g956 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi3g956 217 PANTHER - 1 214 - -
Vvi3g956 217 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi3g956 217 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 214 - -
Vvi3g956 217 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Vvi3g956 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi3g956 217 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Vvi3g956 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi3g956 217 Coils Coil 135 176 - -
Vvi3g956 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi3g956 217 MobiDBLite consensus disorder prediction 66 85 - -
Vvi3g956 217 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14693 PF01486 K-box 5.60E-14 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g956 - - vvi:100853161 381.333