Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g966 ATGGACGAAGAATATGATGTGATTGTTCTTGGGACTGGACTGAAGGAATGCATTCTCAGTGGGCTTCTCTCTGTCAATGGCTTCAAAGTATTGCATATGGACAGAAATGAGTATTATGGAGGAGAGTCATCATCACTTAGCCTTAAACAGCTATGGCAGCGTTTCAGGGGAAATGACCAGCCTCCAGAAAGCTTAGGCTCAAGCAGGGAGTACAATGTGGATATGATTCCTAAGTTCATGATGGCCAATGGTGGTTTGGTCCGTGTTCTCATCCACACTGATGTTACTAAGTACCTAAATTTCAAGGCCGTGGATGGTAGTTTTGTGTACAACAAGGGAAAGATATACAAAGTTCCAGCAACTGATGTTGAAGCACTGAAATCCCCATTGATGGGACTGTTTGAAAAGCGCCGAGCTCGGAAGTTCTTCATTTATGTCCAAGACTATGAGGAGAATGATCCAAAATCTCATGAAGGGATGGATTTAAACAAAGTCACAGCAAGAGATCTTATCTCAAAATATGGGCTGGAGGATGATACAATTGACTTCATTGGTCACTCATTGGCACTTCATAGTGATGATAGTTACTTGGATGAGCCAGCTATGGAATTTGTAAAGAGAATGAAGCTCTATGCAGAGTCCTTGGCACGCTTTCAAGGAGGATCTCCCTATATCTATCCAATGTATGGATTGGGGGAATTGCCTCAGGCATTTGCACGTTTAAGTGCTGTTTATGGTGGCACTTACATGCTCAACAAGCCTGAATGTAAGGTGGAGTTTGATGAAAATGGAAAAGCTTTCGGTGTGACATCTGAAGGGGAAACTGCTAAATGCAAGAAGGTTGTTTGTGATCCATCATATTTACCTGATAAGGTTCAAAAAGTCGGAAAAGTTGCACGTGCTATATGTATAATGAGCCATTCCATTCCAGACACAAATGACTCTCACTCAGTCCAGGTTATTCTTCCACAAAAGCAACTTGGTCGTAAGTCAGATATGTACCTGTTCTGTTGCTCCTATTCTCACAATGTGGCTCCAAAAGGGAAATACATTGCTTTTGTCACAACTGAGGCAGAGACAGATCAACCTGAGGTAGAATTGAAGCGTGGTGTAGATTTACTTGGACCTGTAGACGAGATATTCTATGAAACTTATGACAGATTTGAACCTAAAAACGACCATGAAGTTGACCATTGCTTCATATCTACTAGTTATGATGCAACAACACACTTCGAGTCCACTGTAAAAAATGTGATTGCCATGTACAGTAAGATAACTGGAGAGGAGCTCGATCTTACTGTGGACCTGAGTGCTGCAAGTGCTGCTACTGGAGAATGA 1338 41.93 MDEEYDVIVLGTGLKECILSGLLSVNGFKVLHMDRNEYYGGESSSLSLKQLWQRFRGNDQPPESLGSSREYNVDMIPKFMMANGGLVRVLIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQDYEENDPKSHEGMDLNKVTARDLISKYGLEDDTIDFIGHSLALHSDDSYLDEPAMEFVKRMKLYAESLARFQGGSPYIYPMYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDENGKAFGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMSHSIPDTNDSHSVQVILPQKQLGRKSDMYLFCCSYSHNVAPKGKYIAFVTTEAETDQPEVELKRGVDLLGPVDEIFYETYDRFEPKNDHEVDHCFISTSYDATTHFESTVKNVIAMYSKITGEELDLTVDLSAASAATGE* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15021585 15049296 - Vvi3g966 Vvi3g966 784641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g966 445 PRINTS Rab GDI protein signature 16 28 IPR000806 GO:0005093|GO:0015031
Vvi3g966 445 PRINTS Rab GDI protein signature 75 88 IPR000806 GO:0005093|GO:0015031
Vvi3g966 445 PRINTS Rab GDI protein signature 125 140 IPR000806 GO:0005093|GO:0015031
Vvi3g966 445 PRINTS Rab GDI protein signature 182 196 IPR000806 GO:0005093|GO:0015031
Vvi3g966 445 PRINTS Rab GDI protein signature 280 294 IPR000806 GO:0005093|GO:0015031
Vvi3g966 445 PRINTS Rab GDI protein signature 323 339 IPR000806 GO:0005093|GO:0015031
Vvi3g966 445 PRINTS Rab GDI protein signature 348 366 IPR000806 GO:0005093|GO:0015031
Vvi3g966 445 PRINTS Rab GDI protein signature 381 400 IPR000806 GO:0005093|GO:0015031
Vvi3g966 445 PRINTS Rab GDI protein signature 402 422 IPR000806 GO:0005093|GO:0015031
Vvi3g966 445 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 118 223 - -
Vvi3g966 445 PANTHER GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1 442 - -
Vvi3g966 445 SUPERFAMILY FAD/NAD(P)-binding domain 1 355 IPR036188 -
Vvi3g966 445 SUPERFAMILY FAD/NAD(P)-binding domain 390 433 IPR036188 -
Vvi3g966 445 Gene3D - 2 430 IPR036188 -
Vvi3g966 445 PRINTS Rab GDI/REP protein family signature 6 24 IPR018203 GO:0005092|GO:0007264
Vvi3g966 445 PRINTS Rab GDI/REP protein family signature 24 41 IPR018203 GO:0005092|GO:0007264
Vvi3g966 445 PRINTS Rab GDI/REP protein family signature 69 86 IPR018203 GO:0005092|GO:0007264
Vvi3g966 445 PRINTS Rab GDI/REP protein family signature 86 102 IPR018203 GO:0005092|GO:0007264
Vvi3g966 445 PRINTS Rab GDI/REP protein family signature 135 150 IPR018203 GO:0005092|GO:0007264
Vvi3g966 445 PRINTS Rab GDI/REP protein family signature 212 229 IPR018203 GO:0005092|GO:0007264
Vvi3g966 445 PRINTS Rab GDI/REP protein family signature 230 251 IPR018203 GO:0005092|GO:0007264
Vvi3g966 445 Pfam GDP dissociation inhibitor 1 433 IPR018203 GO:0005092|GO:0007264
Vvi3g966 445 PANTHER RAB GDP-DISSOCIATION INHIBITOR 1 442 IPR018203 GO:0005092|GO:0007264
Vvi3g966 445 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 57 387 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g966 K17255 GDI1_2; Rab GDP dissociation inhibitor - vvi:100241864 903.279
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g966 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00705 . . Cme01g00204 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00218 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001825 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 4 4 2 2 2 2 1 2 1 0 5 2 2 67