Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g968 ATGTTCTCGCCATCATTCTCCCAGGCTTCCCTCCCTCATCAGTGCCTAGACAACCAAAAATTGGCCCTTCTGCGATTTAAGAATGAATCCTTCTCATTTTCATCATCCTCATCTTCGAAATCTGAATCTTGGAAGCCAGATACTGACTGTTGTTCCTGGGAAGGCATCAAATGTGACAACAACACTGGTCATGTGATCAGCCTTGACCTCAGTTGGGATCAACTTGTTGGAGACATTGATTCTAACAGCAGCCTATTCAAACTTCACAGCCTCATGAGGCTCAACCTCTCCCATAACTCCTTTCATTTTTTCAACTTTAATTCTGAGCTTTTTGGGTTTCCCCAGCTTGTGAATTTGACGCACCTTGATCTTGCCAATTCAGGTTTTTCAGGCCAAGTACCTCTCCAAATGTCTCGCTTGACAAAATTGGTGTTATGGGACTGTTCCCTTTCAGGTCCAATTGATTCTTCTATTTCAAATCTTCATCTTCTCTCAGAACTTGTGCTCTCAAATAACAATCTCTTGTCAGAAGTTCCCGATGTCCTGACAAATCTCTATTCTCTGGTCTCCATTCAACTTAGTTCATGTGGACTGCATGGTGAATTTCCAGGAGAATTCCCTCAGCAAAGTGCACTCAGGGAATTGTCCCTCTCATGCACAAAATTTCATGGGAAATTACCGGAGTCAATAGGCAACCTTGAGTTTTTGACCAACTTATATCTTGACAATTGTAATTTCTCTGGAACACTCCCAAACTCAATTGGCAACCTTACAGCACTTCAATATTTGCTCCTTGATTTGCGCAATAACTCATTTGATGGTATCACTGACTATTCTTTGTTTACACTCCCATCTTTGAAAGACCTTATGCTTGGAAAGAACCGGTTTCATAGTCTACCTGATGAGGGTCCCTTCACACCCTCCTCAAGTTTGAGTTGGCTGGATCTGAGTGAAAATGAATTCCAGGGCCCGATTTCAAGACTGCTCACTGTGCTCACAAGCCTAGAAATCCTTAATCTTTCTTCCAACAAGTTCAATGGCAGTATGGATCTGGGCATTGCCAATTTAACATTTCCCCAACTTGTTTCTCTTCACCTATCTCATAATCACTGGTCGATGACTGATAGTGATGATTTAGCCTTTCCCAACCTTAAGATGTTGAAGATGCGTTCATGCAATGTAACAAAATTCCCAAGTTTCTTGAGAAACCTTCACAGTATGGAAGCTCTGGACCTTTCCAGCAATGGAATCAATGGTCAAATACCCAATTGGATTTGGAGTAGCTCTTTGATCGGTCTGAATCTTTCCCAGAACTTGCTAACGGGTTTAGATCGACCTTTGCCAGATGCCTCCTCACTTCAAATGGGAGCTTTGGATGTTCATTCCAACAAACTACAAGGTTCACTTCCATTTCTGTCCCAGCAGATTGAATTTCTAGATTATTCTGATAACAATTTCAGGTCTGTCATCCCAGCTGACATTGGTTCATATCTCTCCAAGGCGTTCTTCTTTTCAGTTTCAGGCAATAACCTCATTGGAAAAATCCCCACATCAATCTGCAGCGCCAGGAAACTTCAAGTTCTTGATCTGTCGGATAACCAGTTGAATGGTACAATTCCTACATGTTTGGGGAACTTCAGCAGTGAACTATTAGTACTTAATCTAGGCGGGAACAATTTGCAAGGAACCATGCCTTGGAGTTATGCAGAAACCCTAAGCACGCTTGTGTTCAATGGAAATGGGTTAGAAGGAAAGGTTCCAAGATCTTTGTCAACTTGTAAAGGATTGGAAGTTTTAGACCTTGGAGACAACCAAATACATGATACCTTCCCGTTCTGGTTGGGGAATCTACCACAGTTGCAGGTTCTTGTCTTGCGCTCCAATAAGTTCTATGTGAGTGCAAGTTATTCTTATTACATCACAGTGAAACTAAAAATGAAAGGAGAAAACATGACACTAGAAAGGATCCTAAATATTTTCACATCCATCAACCTCTCCAACAATGAATTTGAAGGAAAAATTCCAAAGTTGATCGGAGAACTCAAGTCACTGCACGTCCTGGACTTGTCCCATAACAATCTTGATGGCCCTATTCCCTCATCGCTCGAAAATCTACTCCAACTTGAGTCATTAGATCTCTCACATAATAAGCTTTCAGGAGAGATCCCTCAGCAACTTGTAAGGCTGACATTCCTTTCCTTCATAAACCTGTCAGAAAACGAACTCCAAGGATCTATACCAAGTGGTGCACAATTTAACACATTTCCTGCAGGATCCTATGAGGGAAACCCAGGGCTATGTGGGTTTCCATTGCCCACGAAGTGTGAAGCTGCAAAGGAAGCACTGCCCCCAATTCAGCAACAGAAGCTGGAATTGGATTCCACGGGTGAATTTGATTGGACAGTGCTACTAATGGGATATGGTTGTGGACTAGTAGCAGGGTTGAGCACGGGATACATCTTATTCTGGGGAAATGGATTCATTGCTGAAAGTATTACAACAAAAATGCAACAATCACGCTTGAGATCAAGCCAGCGAAGGAGGAGTTAG 2550 42.24 MFSPSFSQASLPHQCLDNQKLALLRFKNESFSFSSSSSSKSESWKPDTDCCSWEGIKCDNNTGHVISLDLSWDQLVGDIDSNSSLFKLHSLMRLNLSHNSFHFFNFNSELFGFPQLVNLTHLDLANSGFSGQVPLQMSRLTKLVLWDCSLSGPIDSSISNLHLLSELVLSNNNLLSEVPDVLTNLYSLVSIQLSSCGLHGEFPGEFPQQSALRELSLSCTKFHGKLPESIGNLEFLTNLYLDNCNFSGTLPNSIGNLTALQYLLLDLRNNSFDGITDYSLFTLPSLKDLMLGKNRFHSLPDEGPFTPSSSLSWLDLSENEFQGPISRLLTVLTSLEILNLSSNKFNGSMDLGIANLTFPQLVSLHLSHNHWSMTDSDDLAFPNLKMLKMRSCNVTKFPSFLRNLHSMEALDLSSNGINGQIPNWIWSSSLIGLNLSQNLLTGLDRPLPDASSLQMGALDVHSNKLQGSLPFLSQQIEFLDYSDNNFRSVIPADIGSYLSKAFFFSVSGNNLIGKIPTSICSARKLQVLDLSDNQLNGTIPTCLGNFSSELLVLNLGGNNLQGTMPWSYAETLSTLVFNGNGLEGKVPRSLSTCKGLEVLDLGDNQIHDTFPFWLGNLPQLQVLVLRSNKFYVSASYSYYITVKLKMKGENMTLERILNIFTSINLSNNEFEGKIPKLIGELKSLHVLDLSHNNLDGPIPSSLENLLQLESLDLSHNKLSGEIPQQLVRLTFLSFINLSENELQGSIPSGAQFNTFPAGSYEGNPGLCGFPLPTKCEAAKEALPPIQQQKLELDSTGEFDWTVLLMGYGCGLVAGLSTGYILFWGNGFIAESITTKMQQSRLRSSQRRRS* 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15118889 15122036 + Vvi3g968 Vvi3g968 784643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g968 849 ProSiteProfiles Leucine-rich repeat profile. 707 730 IPR001611 GO:0005515
Vvi3g968 849 SMART LRR_typ_2 404 428 IPR003591 -
Vvi3g968 849 SMART LRR_typ_2 705 729 IPR003591 -
Vvi3g968 849 SMART LRR_typ_2 332 355 IPR003591 -
Vvi3g968 849 SMART LRR_typ_2 161 185 IPR003591 -
Vvi3g968 849 SMART LRR_typ_2 617 640 IPR003591 -
Vvi3g968 849 SMART LRR_typ_2 681 704 IPR003591 -
Vvi3g968 849 SMART LRR_typ_2 523 546 IPR003591 -
Vvi3g968 849 SMART LRR_typ_2 283 306 IPR003591 -
Vvi3g968 849 SMART LRR_typ_2 88 113 IPR003591 -
Vvi3g968 849 Pfam Leucine rich repeat 284 345 IPR001611 GO:0005515
Vvi3g968 849 Pfam Leucine rich repeat 683 742 IPR001611 GO:0005515
Vvi3g968 849 Pfam Leucine rich repeat 571 630 IPR001611 GO:0005515
Vvi3g968 849 Gene3D Ribonuclease Inhibitor 12 109 IPR032675 -
Vvi3g968 849 Gene3D Ribonuclease Inhibitor 463 782 IPR032675 -
Vvi3g968 849 PRINTS Leucine-rich repeat signature 525 538 - -
Vvi3g968 849 PRINTS Leucine-rich repeat signature 705 718 - -
Vvi3g968 849 Pfam Leucine rich repeat N-terminal domain 17 59 IPR013210 -
Vvi3g968 849 Gene3D Ribonuclease Inhibitor 378 462 IPR032675 -
Vvi3g968 849 Gene3D Ribonuclease Inhibitor 306 377 IPR032675 -
Vvi3g968 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE 637 828 - -
Vvi3g968 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE 11 148 - -
Vvi3g968 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE 144 633 - -
Vvi3g968 849 Gene3D Ribonuclease Inhibitor 110 300 IPR032675 -
Vvi3g968 849 Pfam Leucine Rich Repeat 524 546 IPR001611 GO:0005515
Vvi3g968 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 144 633 - -
Vvi3g968 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 11 148 - -
Vvi3g968 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 637 828 - -
Vvi3g968 849 SUPERFAMILY RNI-like 67 426 - -
Vvi3g968 849 SUPERFAMILY RNI-like 314 748 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g968 - - - vvi:100853460 1275.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g968 Vvi18g1745 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g968 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .