Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g969 ATGCCTCGCAAAGGAAACTATCAAGCTGATTATTATGACAAAGATTATGATTATGAGGATTATGAGGATTATGATTATGATCTTGATGTAGAAGAAAATGGAGAAGCTGTTGAGACAAACCAGGAAACTGTTCGGCGTGGGATTTGGCGTTGCTCAATTTGCACATTTGATAATGATGAGAGTATGTCTGCATGTGATATTTGTGGGGTTCTTCGCTATCCTTTGGTTAACATTCGCAACAATAATGATACAAAAACAGCTGATGGCATATGCAAAGATTCTGGAGCATCTATAATGGCCAAGTCTCTTTTTGCACAATTGCCGCATCGGACACTGAAAAAGGCTGTGATCTTTCAACTACAGAATGATGATGTTGTGATAGAAGAGAGCTCTAACTTCCAAAAGCATGGGAATATCCAAGGACAATTTCACGAGGTCCATAAGGCTTTTAGCTTTCATGGACTTCACCATATCAATATAGCCCCTTTCAAGTTTGATGTTCCTTCTCCAGATGAATTAGTTTCTAACGGAATGCATGCCTCCAAAATGGCTTCAAAAGCCAATCTCACCACTTCAGTATCTTCTGAAGTTCCGTCAAGAGTCATTGATAAGCATGGTTTAGTTAATAAACAATCTAGTGCTAAAAGATCAGATAGGTCCTCTGATTTGATGCCAAAAGGCAGACATGAAAATGTGGGTGACAGAGACTTTTCAGAGAGTGGTGCAGCAAATACAGAGTCAAGTGCTAAAGGTTCAGATAGCTCATCCATGTTGATGCCAAAAGGAAGAAATAATAGCAAGGATGAAAGCAATATTTCTTCAATTGACAAAAACAAACGTCAAAGTATTTCTGGCAATTTGTTGTCCAGTATGACTTTGAATGTTAAATCTGAACACTCAAAGAGCAGTAGTGCTGGAAAATCAGTTTCAGATGTGCACTATAAGCCCGAGAAATGGATGATCCCTGATCAAGAAAACGATGTTCTGACTCAATTGAATCTTGCAATTGTTGGTCATGTTGATTCTGGGAAATCAACTCTCTCAGGAAGACTGCTACACCTATTGGGACGAATATCCCAAAAAGAAATGCACAAATATGAGAAAGAGGCTAAACTACAGGGCAAGGGTTCGTTTGCTTATGCTTGGGCATTGGATGAGAGCACGGAAGAAAGGGAAAGGGGCATAACTATGACTGTAGCTGTTGCTTATTTTGACTCCAAAAAGTATCATGTTGTTGTGCTTGACTCCCCAGGTCATAAAGATTTTGTTCCAAACATGATTTCTGGCGCAACACAAGCAGATTCTGCAATTCTCGTTATAGATGCCTCAATTGGTGCATTCGAAGCAGGTGTGGATAGTACTGGAGGGCAAACAAGGGAACATGCACAACTTATTAGAAGTTTTGGTGTTGATCAAATTATAGTTGCGGTTAACAAAATGGATGCTGTGGAATACTCCAAGGAACGGTTTGATTTCATCAAAATGCAGCTTGGAACTTTTCTCCGTTCTTGTGGTTTCAAGGATTCTTCTGTCTCCTGGATTCCATTGAGTGCCATGGAAAATCAAAATCTGGTGGAAGCAGCTTCTGATGCTCGTTTGTCATCCTGGTATCAAGGACCTTACCTGTTGGATGCTATAGATTCCCTCCAACCTCCCACAAGAGATTTTTCAAAGCCTCTACTTATGCCAATATGTGATGTCATCAAACCATCATCATCAGGACAGGTGTCTGCATGTGGTAAATTGGAGGCTGGAGCTCTTCGAAGTGGGTTCAAGGTTCTAGTCATGCCATCTGGAGATGTGGCAACAGTGCGTTCCCTAGAACGTGACTCTCAGACTTGTGCCATTGCAAGAGCAGGAGATAATGTGGCTGTTTGTCTACAAGGTATTGATGGAAGTAATGTGATGGCTGGTGGTGTGCTTTGTCAGCCAGACTTTCCAGTTGCGGTTGCAACTCGTTTGGAGCTGAAGGTTCTTGTCTTGGATATTAAAACCCCAATTTTAATGGGCTCTCAGTTGGAATTTCACACACACCATTCAAAGGAGGCTGCAACAATTGTAAAGATACTGTCGTTGCTCGATCCAAAGACTGGAAAAGTAACGAAGACAGCTCCCCGTTGTGTAACAGCAAAGCAGAGTGCAGTACTGGAGGTGGCTTTGAGTGGAGCAGTATGCGTGGAAGAGTTCTCAAATTGCAGAGCTCTTGGGAGAGCGTTTTTAAGAGCAATGGGAAGAACTCTTGCTGTAGGCATTGTAACCCGAGTAATAAAGGACCATGAATAG 2283 41.61 MPRKGNYQADYYDKDYDYEDYEDYDYDLDVEENGEAVETNQETVRRGIWRCSICTFDNDESMSACDICGVLRYPLVNIRNNNDTKTADGICKDSGASIMAKSLFAQLPHRTLKKAVIFQLQNDDVVIEESSNFQKHGNIQGQFHEVHKAFSFHGLHHINIAPFKFDVPSPDELVSNGMHASKMASKANLTTSVSSEVPSRVIDKHGLVNKQSSAKRSDRSSDLMPKGRHENVGDRDFSESGAANTESSAKGSDSSSMLMPKGRNNSKDESNISSIDKNKRQSISGNLLSSMTLNVKSEHSKSSSAGKSVSDVHYKPEKWMIPDQENDVLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESTEERERGITMTVAVAYFDSKKYHVVVLDSPGHKDFVPNMISGATQADSAILVIDASIGAFEAGVDSTGGQTREHAQLIRSFGVDQIIVAVNKMDAVEYSKERFDFIKMQLGTFLRSCGFKDSSVSWIPLSAMENQNLVEAASDARLSSWYQGPYLLDAIDSLQPPTRDFSKPLLMPICDVIKPSSSGQVSACGKLEAGALRSGFKVLVMPSGDVATVRSLERDSQTCAIARAGDNVAVCLQGIDGSNVMAGGVLCQPDFPVAVATRLELKVLVLDIKTPILMGSQLEFHTHHSKEAATIVKILSLLDPKTGKVTKTAPRCVTAKQSAVLEVALSGAVCVEEFSNCRALGRAFLRAMGRTLAVGIVTRVIKDHE* 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15151188 15174582 + Vvi3g969 Vvi3g969 784644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g969 760 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
Vvi3g969 760 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Vvi3g969 760 CDD EF1_alpha 333 552 - -
Vvi3g969 760 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Vvi3g969 760 MobiDBLite consensus disorder prediction 238 269 - -
Vvi3g969 760 CDD HBS1_C_III 647 755 - -
Vvi3g969 760 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 652 756 IPR009001 -
Vvi3g969 760 Pfam Elongation factor Tu GTP binding domain 332 548 IPR000795 GO:0003924|GO:0005525
Vvi3g969 760 Gene3D Translation factors 556 647 - -
Vvi3g969 760 SMART zf_4 47 71 IPR001876 -
Vvi3g969 760 PANTHER TRANSLATION FACTOR 50 758 - -
Vvi3g969 760 MobiDBLite consensus disorder prediction 209 236 - -
Vvi3g969 760 MobiDBLite consensus disorder prediction 187 284 - -
Vvi3g969 760 Gene3D Translation factors 648 755 - -
Vvi3g969 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 571 IPR027417 -
Vvi3g969 760 PANTHER OS04G0595300 PROTEIN 50 758 - -
Vvi3g969 760 SUPERFAMILY Translation proteins 557 681 IPR009000 -
Vvi3g969 760 Pfam Elongation factor Tu C-terminal domain 648 755 IPR004160 -
Vvi3g969 760 PRINTS GTP-binding elongation factor signature 333 346 IPR000795 GO:0003924|GO:0005525
Vvi3g969 760 PRINTS GTP-binding elongation factor signature 392 400 IPR000795 GO:0003924|GO:0005525
Vvi3g969 760 PRINTS GTP-binding elongation factor signature 412 422 IPR000795 GO:0003924|GO:0005525
Vvi3g969 760 PRINTS GTP-binding elongation factor signature 428 439 IPR000795 GO:0003924|GO:0005525
Vvi3g969 760 PRINTS GTP-binding elongation factor signature 473 482 IPR000795 GO:0003924|GO:0005525
Vvi3g969 760 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 329 560 IPR000795 GO:0003924|GO:0005525
Vvi3g969 760 Gene3D - 321 553 IPR027417 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g969 Vvi7g896 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g969 K14416 - vvi:100262342 1155.97