Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g974 ATGGCCCACCCAAAAGACAAAGAACGACTGGTAGAGCGAACTTTCCAAGATGCTGTGCCAATTCTGCTTGGTCTTCTTTCTGAGGAAGGGACCAAAGGCCCCAACACTCAAGATCCTCCAGTGTCCAACACCCCAGATCATTATGCGTTGTTGAAACAAATCAGAGAGTACTTTGAGAACAGACAAGATCTGTTCCGTGACCTCAAGAGAACGGAAGACAAACTCCTGGAGAATTTCACTGCTCTTGAAGAAGAGATCGACAACTCTAAATACGGCAGTGATGGCAGCCGAGGGGAGCACTCTCTTTCAGACAGATTCAAGAGCATAACAGTCGACGTTTCTGAATTCGAACGTTTGGAATTAAAGAAGAGCGAGGAATCACCCAAAAATAATGAGTCAGAGGCTCAGGAAATGGAGATTTCAAAGAAATGGTCTGAATTAAAGGTGGAGCATGACATACTTAACGATTCAGTACTTTCTCGTTTTCAGTTGAGCTATGACAACATTATGGACATTGATCTGTGTCTGCTATGTTTCTCCGTATTTCCGCCCAAATCGGTCATCAAAAAGAGGCCCTTGATTTATTGGTGGCTTGGGGAGGGTTTGATCACCGAGACGGAAGATGGAGAACGCATCTTTGGGGAGCTGATCAAGAAGGGCCTTCTAATTGCAAAATACAAGCCAAATGAGCAAGACAAGAATCCTATTGTGGATAGCTGTACAATGCACTCTTGGAATCGCCTTATGCTGATCTCGGTTGCAAAAAGGGCTCAGTTCTTTGATTTTGATGATGACACAGGATTACCTGCTAATCACGGCACCAGCTCTCGCCGCATGTGTTTGCACCAAAACAGTTCCAGTAGGGCTGCATCCACGGAGCATCGTTTATTGACTTTGTTCAATGTGAATGAGCAATATGTCAATATCAGCAATATTAGAGGGTTTTCAGAGGAGAACAAAATTGAGGTTCTTCAGCTTGGGAGGTGGCAGGATTCAGCCAAGCACCATATAGAAGTCGAAAATGAAGACTTCTTGAAAGCTCTGGGGAGCAAGAAGCACTTGAAGTATCTCAGCCTGCGAGGAATTTCAAGAATCACTGAAATACCTTCCTCCCTTCGCAAGCTCATTAATCTTGAAATACTGGATCTCAGGGCGTGCCACAATCTGGAGAAACTACCATCTGACATTTCAGCTTTGAAGAAGCTCACGCATCTAGATATATCAGAGTGCCACTTGCTAGAAAGCATGCCCAAGGGCCTGGAGGAGCTGACTTCGCTCCAAGTGCTAAAGGGTTTTGTGGTAGCAACTTCAAAAAGAAGCCCTTGCAAGCTTGAAAAACTTGCTGTCTTGGACCAACTTAGAAAGCTGAGTATATATATCAGAAACGAAGCTTATATGGAAGAGCTTGATAAGTTGAGAAAGTTTTCAAAGCTTCGCATTCTATCGATAACATGGGGAGAAAGAGGAGCACAGGGTCCAAAAGAACAACCAGGAAAGCAAGCTACTGAGAGTAAGCCTTTCCCCTTTCCTCCCAAATTAGAGAAACTGGATCTTTGGTGTATCCCTGAAACCGACCCAGCTTGGTTAGACCCTGGTGAGCTTCTGAGTTTAAGGAAGCTGTACATTAGGGGAGGAAAGCTTGTTAGTTTCAAGGAGAGTAATACTGGTAAGAAGTGGGAAGTTCAGATTTTGCGTTTGAAATATCTACGTGCTTTCGATGAAAACAAACCCTGGCGGCGAAACTTCCCGTACCTCTGTTACTTGGAGATAGTAAAGAAAGCTGAGGATGAGCATCGAGCCAGCAGCAGCAGAATCTCTGCTCATAGACCATCCATCCCTAGTGGAGGCACTTTTAAACTTGATGCAGGATTGATTCCTCAACTATCATAA 1890 44.34 MAHPKDKERLVERTFQDAVPILLGLLSEEGTKGPNTQDPPVSNTPDHYALLKQIREYFENRQDLFRDLKRTEDKLLENFTALEEEIDNSKYGSDGSRGEHSLSDRFKSITVDVSEFERLELKKSEESPKNNESEAQEMEISKKWSELKVEHDILNDSVLSRFQLSYDNIMDIDLCLLCFSVFPPKSVIKKRPLIYWWLGEGLITETEDGERIFGELIKKGLLIAKYKPNEQDKNPIVDSCTMHSWNRLMLISVAKRAQFFDFDDDTGLPANHGTSSRRMCLHQNSSSRAASTEHRLLTLFNVNEQYVNISNIRGFSEENKIEVLQLGRWQDSAKHHIEVENEDFLKALGSKKHLKYLSLRGISRITEIPSSLRKLINLEILDLRACHNLEKLPSDISALKKLTHLDISECHLLESMPKGLEELTSLQVLKGFVVATSKRSPCKLEKLAVLDQLRKLSIYIRNEAYMEELDKLRKFSKLRILSITWGERGAQGPKEQPGKQATESKPFPFPPKLEKLDLWCIPETDPAWLDPGELLSLRKLYIRGGKLVSFKESNTGKKWEVQILRLKYLRAFDENKPWRRNFPYLCYLEIVKKAEDEHRASSSRISAHRPSIPSGGTFKLDAGLIPQLS* 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15262807 15265152 + Vvi3g974 Vvi3g974 784649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g974 629 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN-RELATED 49 587 - -
Vvi3g974 629 Gene3D Ribonuclease Inhibitor 283 611 IPR032675 -
Vvi3g974 629 Gene3D - 162 251 IPR036388 -
Vvi3g974 629 Coils Coil 54 85 - -
Vvi3g974 629 PANTHER DISEASE RESISTANCE PROTEIN RP 49 587 IPR044974 GO:0006952
Vvi3g974 629 MobiDBLite consensus disorder prediction 26 45 - -
Vvi3g974 629 SUPERFAMILY RNI-like 307 589 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g974 - - - vvi:100243468 1121.3
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g974 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003849 1 2 1 1 1 2 1 3 2 2 2 2 0 1 2 1 2 1 1 2 2 1 0 1 1 2 1 2 2 3 45