Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g975 ATGGCCCCTGGAACACCAGAGCTTCAACCTCCCAAGTTCCCAAGCGTCAAATCTCTATCCGAATCTTCTGCTCTCACCTCCATCCCTTCCTCCTACACCTTCACCACTGATCCTAACCAACACATCGCTTCAGACCCACAAGACTCTATCCCAGTCATTGATTTTTCCTTACTCACCTCCGGTAATCCTGATCAACGCTCCAAAGCCATCCAAGACCTTCACAGGGCCTGTGAGAAATGGGGCTTCTTCATGGTGATCAATCACGGCGTGGCGGAGAGTTTGATGAAGGGGATGATTGAGGCGTGTAGAGGATTCTTTGATCTGACGGAGGAGGAGAAGGGGGAGTTTGAAGGAAAGCCTGTGCTGGCACCCATCAGATGTGGTACAAGCTCTAATACAAGCCTGGATAAAATATTATTCTGGAGAGATTTTCTCAAGGTGTTTCTGCATCCTCAGTTTCACTCACTCAACAAGCCTCCCGGCTTCAGTGAGGTTTCATTAGAGTACAGTCAAAGGATTAAAAAGGTGGTAGAAGAATTGCTTAAAGGGATATCAAAGAGCTTGGGATTGGAAGAGTGGTATATAGACAAGGCCATGAATATGAGTTCAGGTTTGCAAGTCCTGGTTGCCAACTTGTATCCACCTTGTCCTCAGCCAGAACATGCAATGGGCTTGCCCCCTCATTCCGACTATGGCTTATTGACTGTCCTCACACAGAATGAAGTTGGCGGCCTTCAAGTGCAGCATCAAGGCAAATGGTTCAATGTGAATCTCATCCCCAACTCTCTTTTAGTCAACATTGGTGATCATCTTGAGGTTCTAAGCAACGGGAAGTACAAGAGTGTCTTACATAGAGTTGTGGTGAACAGAAAAGCCACGAGGCTATCCGTCCTCATCACAAATGGACCATCCCTAGACACAGTTGTTGCGCCAGCCCCAGAATTGATAGACGAAAGCCATCCACCAGCATATTTTGGGATGAAATTCCAAGAAACCCTTACACTTAGCCAGACCAACAAGCATCATGAGAAAAGTATCCTGGATCAGGTCCGGATTTGA 1059 46.93 MAPGTPELQPPKFPSVKSLSESSALTSIPSSYTFTTDPNQHIASDPQDSIPVIDFSLLTSGNPDQRSKAIQDLHRACEKWGFFMVINHGVAESLMKGMIEACRGFFDLTEEEKGEFEGKPVLAPIRCGTSSNTSLDKILFWRDFLKVFLHPQFHSLNKPPGFSEVSLEYSQRIKKVVEELLKGISKSLGLEEWYIDKAMNMSSGLQVLVANLYPPCPQPEHAMGLPPHSDYGLLTVLTQNEVGGLQVQHQGKWFNVNLIPNSLLVNIGDHLEVLSNGKYKSVLHRVVVNRKATRLSVLITNGPSLDTVVAPAPELIDESHPPAYFGMKFQETLTLSQTNKHHEKSILDQVRI* 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15307069 15312521 + Vvi3g975 Vvi3g975 784650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g975 352 PANTHER FLAVONOL SYNTHASE/FLAVANONE 3-HYDROXYLASE 13 322 - -
Vvi3g975 352 MobiDBLite consensus disorder prediction 1 20 - -
Vvi3g975 352 Pfam 2OG-Fe(II) oxygenase superfamily 207 297 IPR044861 -
Vvi3g975 352 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 13 322 - -
Vvi3g975 352 PRINTS Isopenicillin N synthase signature 73 90 - -
Vvi3g975 352 PRINTS Isopenicillin N synthase signature 228 249 - -
Vvi3g975 352 PRINTS Isopenicillin N synthase signature 263 289 - -
Vvi3g975 352 Gene3D - 12 343 IPR027443 -
Vvi3g975 352 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 203 303 IPR005123 -
Vvi3g975 352 Pfam non-haem dioxygenase in morphine synthesis N-terminal 50 151 IPR026992 -
Vvi3g975 352 SUPERFAMILY Clavaminate synthase-like 16 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g975 - - - vvi:100253700 714.916
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g975 Vvi18g461 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g975 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00905 Cam10g0930 Cec10g0971 Cco10g0929 Clacu10g0955 Cmu10g1739 Cre10g1113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003038 0 2 2 2 1 1 1 1 1 1 1 1 1 1 2 0 1 4 1 1 1 3 2 3 3 2 4 3 1 5 52