Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g978 ATGGAGGGCATGACGGCTCGAAGCTTTCCATCAATTATCTATGCTCTGGATCCCTTACAGTTGTTCAGTGAGGCTCGGAGTATATTCAGGTTGACGGAAGGAAGGTATTTCATTTGGATAGCAGATTTAATGGGACAAGTGATCTATGGGACAAACACAGCAGCTTTGAGCATAGCTCCGCTCGACAATGGGTTGAGTTGTGGCTCTTGCTATGAGGTTAAGTGCGTGAATGACAGAAAACGGTGCCTGCTTGGCTCCATTGTGATCACAGCCACCAGTTTACGCCCACCAAACAATGCCCTTCCACTTTCAACATCTTCTTCTTCACCGTCTGTGGCTGTTGATTCCGATTTTGATGCGAAGGTGTTTCAGCACAACTTGATGAGGAGTAAGAATTATAATCAGAAAGGATTTGGACACAAAGATGAGACTCTAGAGCTCATGAGTCGTGAGTATACCAGTGACATCATAAAGACGATTCCACTGCTGATCATTCTGATTGTGAGAACAAGGCTGGAAGTTGTGATAACCAGAAGGGGTTTGGTAAGTTCTAAGGAGATAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAACAGGCGTGGGATACGCAAAGTCACCTTTGCCATCTCATCTTCTGTGCCAATTATTGGGCCGTCACATTGCCAGGTCACCCGCGGGCGGCAGCTGCCCCCATTACTCCAGACGTTTCCTCGTCCTTTCTCAGGTTCCCTTCTTCCATAAATTCCCTTCCTCACATCCATCGCATTGTCAATTTTCGGCGATTCGCAGCAAATAAAAGACCGCCCATTTTCCTTTCTGAACATTCAATTCATTCGTGTTTGAGTCCCACGACAATGGCTTCCATCAACGCTTCTTGCCCAACAGCAGCTATTTCCCGTTTACGGGCATGCAAAAACTTCAAATTGTTTAATGGACTGCACGGTGTGAATCCCTCTTTGTCAAATTGGTATACATCTGATTTGGCTTTGATTCGGTTGGGTAGCAAATCATCGTTCACTATCAAGGGTGATGGTAGAACTAGAGCTACATTGATATCTGGAGAAGGTGGCCTCCTATCATACTCCAATGGCAATAATGTTGCTGCAATCACCAAGGACCAATCTGTTGGAATTGAGATACAGCCTGATGCAATAGCATTTGGAACGCTTGAAGCAGATACTGCTCCCGCAACTAATGGATTTCCCATTGATAATGATGAATTTGATCTGGATCGTCCCTCAGAAGGTTTTTCTTCCATTCCAGAGGCCATTGAGGACATTCGTCAAGGAAAGATAGTGGTGGTTGTGGATGATGAAGATAGAGAAAATGAAGGGGACCTAATAATGGCAGCTTCACTGGCAACACCTGAAGCTATGGCATTTATTGTGAAGCACGGGACTGGAATTGTTTGTGTGAGCATGAAAGGAGAAGATTTGGAGAGGTTGGAAATTCCTTTGATGGTAACCCAAAAGGATAATGATGAGAAACTTTCTACTGCATTCACAGTGTCAGTGGATGCAAAGCATGGTACAACCACTGGGGTTTCAGCTCGTGATAGGGCAACAACAATATTGGCTCTTGCATCCAGAGATTCAAAGCCTGAAGATTTCAATCGCCCAGGGCATATTTTTCCGTTGAAGTACAGGGAGGGTGGTGTTCTGAAAAGAGCTGGACATACAGAAGCCTCTGTTGACCTTGCTATGCTAGCTGGCTTGGATCCTGTTGCAGTTTTATGTGAGGTTGTGGATGATGATGGTTCCATGGCGAGATTACCAAAGCTTCGCCAATTTGCAGAGAGAGAGAACTTAAAAATCATATCAATTGCTGATTTAATCAGATATAGGCGGAAGAGAGATAAATTAGTGGATCGTTCTGCTGGGGCAAGGATACCTACAATGTGGGGGCCATTCACAGCATACTGCTATCGGTCCATCTTAGATGGGATAGAACATATTGCTATGGTTAAGGGTGAGATTGGTGATGGGCAAGATATTCTTGTGAGAGTACACTCGGAATGCCTCACAGGAGATATATTTGGGTCTGCTAGATGCGATTGTGGAAATCAGCTGGCACTTGCAATGCAACAGATTGAGAAAGCAGGGAAGGGTGTATTGGTGTACCTCCGTGGGCATGAAGGAAGGGGCATTGGTTTGGGACACAAGCTTCATGCTTATAACCTGCAGGATGATGGACGTGATACTGTGGAAGCCAATGAAGAGCTGGGATTGCCTGTTGATTCAAGAGAATACGGCATTGGTGCCCAGATGCTAAGAGATCTGGGTGTTCGAACCATGAAGCTTATGACAAACAACCCTGCAAAGTACATTGGGCTCAAGGGCTATGGTTTGGCAGTTTCTGGCAGAGTCCCACTTCTAACTCCCATTACAAAGGAGAACGGTAGATATTTGGAGACAAAACGCTCTAAAATGGGACATGTCTATGGCTTAGAATTCAATGGTCATCTCACCAATCTTATCAGTGGGAATGGAAAACAGAGCATCAACACCCAACCTGATCCAGTCTCTGACTCGTAA 2538 45.15 MEGMTARSFPSIIYALDPLQLFSEARSIFRLTEGRYFIWIADLMGQVIYGTNTAALSIAPLDNGLSCGSCYEVKCVNDRKRCLLGSIVITATSLRPPNNALPLSTSSSSPSVAVDSDFDAKVFQHNLMRSKNYNQKGFGHKDETLELMSREYTSDIIKTIPLLIILIVRTRLEVVITRRGLVSSKEIGIPTKAYYAVEEQAWDTQSHLCHLIFCANYWAVTLPGHPRAAAAPITPDVSSSFLRFPSSINSLPHIHRIVNFRRFAANKRPPIFLSEHSIHSCLSPTTMASINASCPTAAISRLRACKNFKLFNGLHGVNPSLSNWYTSDLALIRLGSKSSFTIKGDGRTRATLISGEGGLLSYSNGNNVAAITKDQSVGIEIQPDAIAFGTLEADTAPATNGFPIDNDEFDLDRPSEGFSSIPEAIEDIRQGKIVVVVDDEDRENEGDLIMAASLATPEAMAFIVKHGTGIVCVSMKGEDLERLEIPLMVTQKDNDEKLSTAFTVSVDAKHGTTTGVSARDRATTILALASRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAMLAGLDPVAVLCEVVDDDGSMARLPKLRQFAERENLKIISIADLIRYRRKRDKLVDRSAGARIPTMWGPFTAYCYRSILDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMQQIEKAGKGVLVYLRGHEGRGIGLGHKLHAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPAKYIGLKGYGLAVSGRVPLLTPITKENGRYLETKRSKMGHVYGLEFNGHLTNLISGNGKQSINTQPDPVSDS* 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15416130 15426803 + Vvi3g978 Vvi3g978 784653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g978 845 Hamap GTP cyclohydrolase-2 [ribA]. 621 817 IPR000926 GO:0003935|GO:0009231
Vvi3g978 845 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 119 IPR007112 -
Vvi3g978 845 PANTHER GTP CYCLOHYDROLASE II-RELATED 312 823 - -
Vvi3g978 845 TIGRFAM ribA: GTP cyclohydrolase II 625 814 IPR000926 GO:0003935|GO:0009231
Vvi3g978 845 CDD GTP_cyclohydro2 622 813 IPR000926 GO:0003935|GO:0009231
Vvi3g978 845 Gene3D DHBP synthase 408 622 - -
Vvi3g978 845 Gene3D - 41 140 IPR036908 -
Vvi3g978 845 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 417 813 IPR016299 GO:0009231
Vvi3g978 845 SUPERFAMILY RibA-like 621 793 IPR036144 -
Vvi3g978 845 TIGRFAM ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 419 616 IPR000422 GO:0008686|GO:0009231
Vvi3g978 845 Pfam GTP cyclohydrolase II 628 791 IPR032677 -
Vvi3g978 845 Gene3D GTP cyclohydrolase II 623 794 IPR036144 -
Vvi3g978 845 SUPERFAMILY YrdC/RibB 417 619 IPR017945 -
Vvi3g978 845 PANTHER BIFUNCTIONAL RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA 1, CHLOROPLASTIC-LIKE ISOFORM X1 312 823 - -
Vvi3g978 845 SUPERFAMILY Barwin-like endoglucanases 49 112 IPR036908 -
Vvi3g978 845 SMART dpbb_1 53 133 IPR007112 -
Vvi3g978 845 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 416 620 IPR000422 GO:0008686|GO:0009231
Vvi3g978 845 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 423 615 IPR000422 GO:0008686|GO:0009231
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g978 K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] - vvi:100248717 1105.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g978 Vvi7g896 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g978 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00895 Cam10g0919 Cec10g0957 Cco10g0917 Clacu10g0948 Cmu10g1733 Cre10g1109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000665 2 1 3 4 3 3 2 3 3 3 3 3 4 3 3 3 3 5 3 3 3 3 3 4 4 3 2 7 7 3 99