Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g981 ATGGAGTTTCACCACAGAAAGCTGTTTTCAGATTCGGACAACACAACGGAGGAGTGCCGGTGGTACTGTGATTCTGGGTCGAACGACTCAGGTATTTCTCATGATGATTTCATTGATGAAGATCAGGAACCTGTGGTGGATCACCCCATCTGGTACATCCGCACAGTTGGCCTCCAGCCATCAGTCATCAGTGCTATAACCATCTGTAAGTACAAGAGAGGTGACGGCCTTGTTGAAGGTACTGAATGCTCTGTTTGCTTGGCTGAGTTTGAAGAAGATGAGGCCGTTCGCCTTCTTCCTAAGTGTAACCACGCTTTTCACATCCCTTGTATTGATACTTGGCTTAGCTCCCACACAAATTGTCCTATGTGCCGTGCGGGTATCGTTTCTAGCACGGCGGGAGCTCCATCTCCCGAGCAGAGTGTTGAGAATTCAGGTCCTTTGGAGGAAGCCCGGGTGGAAATTCCTGAGAATGGCGGCCAGTTTGAAGAAATAGAAGATGAGGTTTGTGAATTGAGGATTGGGAGAGAGGAAGAAGGCGAGTTAGGGGGGGTGGAGAATGAAAGAAGTCGTCCTGCTTCCACTGCTATCACATTGACTATTATGAAAGGCTATTCCTGTGTCAACTTGCCCATAAGCACCTACTTTAGTGCATTGAAGCGTCTCTGGTTGATGGAAAATGTCGATGTTGTGAAAAAAGCAGTTGAAGGGGGGGATATTGTTTGGAACAATAGACAGTTGATTTGGAATATGATAAGAGGCTTGAATGGTGGGGCTCATGTCATTGATGTCTCAAATGCATTTAGAACAATGCTCATAAATCCCAAAACCCTTGATCCTAGGCATTCCTGTTAA 855 46.32 MEFHHRKLFSDSDNTTEECRWYCDSGSNDSGISHDDFIDEDQEPVVDHPIWYIRTVGLQPSVISAITICKYKRGDGLVEGTECSVCLAEFEEDEAVRLLPKCNHAFHIPCIDTWLSSHTNCPMCRAGIVSSTAGAPSPEQSVENSGPLEEARVEIPENGGQFEEIEDEVCELRIGREEEGELGGVENERSRPASTAITLTIMKGYSCVNLPISTYFSALKRLWLMENVDVVKKAVEGGDIVWNNRQLIWNMIRGLNGGAHVIDVSNAFRTMLINPKTLDPRHSC* 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15529866 15532548 - Vvi3g981 Vvi3g981 784656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g981 284 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 34 190 IPR044675 -
Vvi3g981 284 PANTHER RING-H2 FINGER PROTEIN ATL54-LIKE 34 190 - -
Vvi3g981 284 CDD RING-H2_PA-TM-RING 82 125 - -
Vvi3g981 284 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Vvi3g981 284 SUPERFAMILY Actin-like ATPase domain 205 279 IPR043129 -
Vvi3g981 284 SMART ring_2 83 124 IPR001841 -
Vvi3g981 284 Pfam Ring finger domain 82 125 IPR001841 -
Vvi3g981 284 SUPERFAMILY RING/U-box 77 134 - -
Vvi3g981 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 132 IPR013083 -
Vvi3g981 284 Gene3D - 189 284 - -
Vvi3g981 284 SMART FANCL_C_2 79 133 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g981 Vvi18g458 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g981 - - vvi:100257251 313.153