Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g99 ATGGGAAATCCATTCCAGTTCTCATTCATTACCGTTTTTGGATTATTTCTAACAAATGAGAATGGGAATAGAAAATTCATTTTAATGGGAATTAAAACCTACCTCACCTTGTCTAGTTTTTTATTCCGCTCTTCCACATGTTTGATTCCCCTTCATTCCCATTCTTATACCCCTACCAAACACAACCTAAAGATCCAAACCAACCTCCATGACATCTCAAGGAGGCGAGAAATCCTGGGAATAAAAAATATTGGAGTAGGAACAAGTACTTCAAGTCAGATGCTGCAGAATCTAAGACGGACCACTCCTCGCGCCGAAAAACATGTCATTGTGGGCCTGAATGAAGAAGCAAATAAGCTAGTGGAGCAGCTGACCACGGGGGACCCAAGGCGCCGCCAAATTCTAAACCAACTTCTTCATAACCCAAAGCAGATAGAGAAATTGCAGGAGAACGAGTTGGAGGATTTACTTCACGAGCACCTAGAGGAGAAAAGATTTTTGGTAGTTTTGGATGACATATGGAAAAGTGACGATTGGAAGTGTCTTGCAAGGGTGTTCCCAGAGGAGAGTAATGGCAGCAGATTACTTCTTACAACTCGAAATAAGGATGTTGCTTTGCAAGCAGATGCTCGAAGTGTTCCACATGACATGCAGCTTCTCTCGGAAGAAGAGGGTTGGAAGTTGTTTTGTAGAACTGCAATCCCTGACAATGTTACTGACGGTTGTCCTCCAGAGTTGAAGGAATTTGGGGAAAAAATGGTGAAGAAATGTGCTGGTTTACCATTGGCTATTGTTGTATTGGGAGGCTTGTTGTCTTCCAAAAAGCAGTTGCCGACTATGTGGGAAGAAGTGTTCAACAAACTCCGGGTGCACTTTGCCGCACGCAATGGAGTAGATGCAATATTGAGCTTAAGCTACATCGATCTGCCCCACAACTTGAAATCGTGCTTTCTTTATCTAGGCCTCTTTCCAGAAGATCAGGTAATCTCCAAGAGAACATTACTGCTTCTATGGATGGCTGAGGGTTTTGTTCCACAGCAAGATGAACAAAGACTGGAGGACACTGCTGAGGATTATTTGAATGAGTTAATCAATAGAAACTTGGTTCAAGCGGTAGCAGTGAGTGTTAATGAGAGAGTTACAGAATGCCGGATTCATGATCTAGTACGGGATTTATGCATAAAAAAAGCCAAGGAGCAAAACTTTGTTGAGATTCAAAAGGACATAGTTTCTCTTCCCTCAACTACTTCATCTTTTCCTTTCACCAAATCCCGTCGACTAGGTATTTATTTGGACTTGGAGAGGTATGCTTCCAGAGAACATTCAACCCCATATATTCGGTCTCTCTTCTTTTTTTTACTCCAACGTAGTCCCCATAGTCGATATTATGGGATACTATCATGGTTAGATTTTATTTACAAATATTACAAATTACTTAGAGTGTTAGACTTGGGAAATGTAAAGATCTATGAGCCACCAAATTCATTTGGGAAACTAGTTCATTTAAGGTACTTGAGATTAACAGCGCATAGGTATTCAAACTGTCCACCTTCTTGTTTGGGGAGTTTGCAGGACTGTGTAAACTTTCCAACCTCCTTAGATGAGCTAAGGAGTTTACAGACTTTGGATATATGTATTTCTAAAGGAACACCAACTATGATAGAGAAAATGAAAAATCTACGACACCTTTTCCTCTCGTATGATAGAGAAGATGACAAGCCATTACGGATTGACAATCTAAGAAATCTCCAAACTCTGTCCGGAATATGGTTTAGTGATTGGCAACAAAATGACACAAGTGACTTAACTAGCCTTCGGAAACTGAAAATAAAAATGGATGACGCGATAGTGGTCGAGTTTTCAAACTCCATTGCTAAGCTTGAGAATCTTCGCTCCTTGTATCTTAAGGCATCACATTTCTCCGGGGTTCCATCCTTTGACATGAGCTCTTTGCTACATCTATCTAAGCTGCATATGGAAAGATCCATAGGGCAATTACACGAGTTCCCACCAAATCTAACACAGCTGACCTTAGAAGATACTGAGCTAGACTATGACCCAATGGTGATTTTGGAGAAGCTGCCAAAATTGTTGACTTTAAGATTAAGAATGTGGTCATACCGTGGATGGGAAATGCAAGTATCTGCAGATGGCTTTCCTCAACTCAAAATCCTTCAACTTTCTGACTTATACGGACCGACGAAGTTGTTGATTATAGAGAAGGGTGGCATGTCAAACCTTACTCAGTTACAGATTTTTAGAAGTGTCTTGGACATCTATGGACTTGGTGAGCTCTTACATCTGAAGAGGATAGATGTCATTGATATATCTCCACATTCTCATCGCTGGATTTCTTCTTTACCCTGTTCTTCTGAATGGCAAGATATAAGAAGACGGAAGAAGGCAAGGATATATGGCACTTATACCGCCAATGATTCTTGGGGTTATATGCAGCAGCACAAGAAGATTGATTTTAGATAA 2481 40.71 MGNPFQFSFITVFGLFLTNENGNRKFILMGIKTYLTLSSFLFRSSTCLIPLHSHSYTPTKHNLKIQTNLHDISRRREILGIKNIGVGTSTSSQMLQNLRRTTPRAEKHVIVGLNEEANKLVEQLTTGDPRRRQILNQLLHNPKQIEKLQENELEDLLHEHLEEKRFLVVLDDIWKSDDWKCLARVFPEESNGSRLLLTTRNKDVALQADARSVPHDMQLLSEEEGWKLFCRTAIPDNVTDGCPPELKEFGEKMVKKCAGLPLAIVVLGGLLSSKKQLPTMWEEVFNKLRVHFAARNGVDAILSLSYIDLPHNLKSCFLYLGLFPEDQVISKRTLLLLWMAEGFVPQQDEQRLEDTAEDYLNELINRNLVQAVAVSVNERVTECRIHDLVRDLCIKKAKEQNFVEIQKDIVSLPSTTSSFPFTKSRRLGIYLDLERYASREHSTPYIRSLFFFLLQRSPHSRYYGILSWLDFIYKYYKLLRVLDLGNVKIYEPPNSFGKLVHLRYLRLTAHRYSNCPPSCLGSLQDCVNFPTSLDELRSLQTLDICISKGTPTMIEKMKNLRHLFLSYDREDDKPLRIDNLRNLQTLSGIWFSDWQQNDTSDLTSLRKLKIKMDDAIVVEFSNSIAKLENLRSLYLKASHFSGVPSFDMSSLLHLSKLHMERSIGQLHEFPPNLTQLTLEDTELDYDPMVILEKLPKLLTLRLRMWSYRGWEMQVSADGFPQLKILQLSDLYGPTKLLIIEKGGMSNLTQLQIFRSVLDIYGLGELLHLKRIDVIDISPHSHRWISSLPCSSEWQDIRRRKKARIYGTYTANDSWGYMQQHKKIDFR* 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1043473 1048736 - Vvi3g99 Vvi3g99 783774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g99 826 Pfam NB-ARC domain 132 301 IPR002182 GO:0043531
Vvi3g99 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 320 IPR027417 -
Vvi3g99 826 Gene3D - 305 397 IPR036388 -
Vvi3g99 826 PANTHER DISEASE RESISTANCE PROTEIN RP 136 783 IPR044974 GO:0006952
Vvi3g99 826 Gene3D - 44 213 IPR027417 -
Vvi3g99 826 PRINTS Disease resistance protein signature 160 174 - -
Vvi3g99 826 PRINTS Disease resistance protein signature 257 271 - -
Vvi3g99 826 PRINTS Disease resistance protein signature 474 490 - -
Vvi3g99 826 PANTHER - 136 783 - -
Vvi3g99 826 SUPERFAMILY L domain-like 385 784 - -
Vvi3g99 826 Gene3D Ribonuclease Inhibitor 457 808 IPR032675 -
Vvi3g99 826 Gene3D - 219 304 IPR042197 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g99 - - - vvi:100260633 1402.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g99 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014648 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 13 16