Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g991 ATGACATTCAATTATGTCGAATTTGAATATATTTTCAAATCGCCAATCGCCATGGCCACCGCCACTCCAAACCTTCTCCAACCTCCTAACTTTACATGCGTCAAATCCCTATCCGAATCTTCTGCTCTCACCTCCATCCCTTCCACCTACACCTTCACCACTGATCCCAATCAACTCCTCGCTTTTGAGCCACAGCACTCCATCCCCATCATCGACTTCTCCTTACTCACTTCTGGTGATCCTGATCAACGCTCCAGAGCCATCCAGGACCTTGACCAAGCCTGTCTGGAATGGGGCTTCTTCATGTTGATCAATCACGGTGTGCCGGAGAGTCTGATGACGGGGATGATTGAGGCGTGTAGAGGGTTCTTCGATCTGACGGAGGAGGAGAAGCGTGAGTTTCAGGGGACCCACGTTTTGTCTCCGATCAGGTGCGGCACAAGCTTCAATGCTAGGGTGGACCAGATTTTGTTCTGGAGGGATTTTCTGAAGGTCTTCGTGCATCCACAGTTCCACTCTCCCAGCAAACCAGCGGGCTTCAGTGAGGTTTGTCTAGAATATACCCAAAGAATGAGAAAAGTGGCTGGAGAATTACTTAAAGGGATATCGAAGAGCTTGGGATTGGAAGAGTGGTATATAGACAAGACCATGAATATGGATTCGGGTTTACAAATCCTCACTGTCAACCTCTATCCACCCTGTCCTCAGCCAGAGTATGCAATGGGAATGCCGCCTCATTCAGACCACAGCTTCTTGACCATCCTCATACAGAATGGGATTGGTGGGCTTCAGGTGCAGCACAAAGGACAATGGTTCGATGTGAATCCAATCCCCAACTCCATTTTGGTTAACACAGGCGACCATCTTGAGGTTTTGAGCAATGGTAAGTACAAGAGTGTTTTGCATCGAGCGGTGGTGAACAACAAAACCACTAGGATATCATTGGCTCTTTCAAATGGACCATTGCTAGACACAGTCGTTGAACCAGTACCAGAGCTAAGTCATCCATTGAAATATGTTGGAATGGCATATAAAGAATACTTGGAACTTCAACAAGGAAACAAACTTGATGGGAAAACCTGCTTGGATCGAGTCCGAATCAGAACAATTGAGGTTTGTCTAGAATATACCCAAAGCATCAGAAAAGTAGTTGGAGAATTACTTAGAGGAATATCAAAGAGCTTGGGATTGGAAGAGTGGTATATAGACAAGACCATGAATATGGATTCAGGTTTACAAATCCTCATTGCCAACCTCTATCCACCCTGTCCTCAGCCAGAGTATGCAATGGGATTGCCGCCTCATTCAGACCACAGCTTCTTGACCCTCCTCATACAGAATGGGATTGGTGGGCTTCAGGTGCAGCACAAAGGACATTGGGTCGATGTGAATCCAATCCCCAACTCCATTTTGGTTAACACCGGCGACCATCTTGAGGTTTTAAGTAATGGTAAGTACAAGAGTATTTTGCATCGAGCAGTGGTGAATAACAAAACCACTAGGATATCATTGGCTGTTTCAAATGGACCATCACTAGACACAGTCGTTGAGCCAGCACCAGAGCTAAGTCAGCCATCGACATATGTTGGAATGACATTTAAAGAATACTTGGAACTTCAACAAGGAAACAAGCTTGATGGGAAAACTTGCTTGGATCGAGTCCGAATCAAAACAATGTGA 1680 45.71 MTFNYVEFEYIFKSPIAMATATPNLLQPPNFTCVKSLSESSALTSIPSTYTFTTDPNQLLAFEPQHSIPIIDFSLLTSGDPDQRSRAIQDLDQACLEWGFFMLINHGVPESLMTGMIEACRGFFDLTEEEKREFQGTHVLSPIRCGTSFNARVDQILFWRDFLKVFVHPQFHSPSKPAGFSEVCLEYTQRMRKVAGELLKGISKSLGLEEWYIDKTMNMDSGLQILTVNLYPPCPQPEYAMGMPPHSDHSFLTILIQNGIGGLQVQHKGQWFDVNPIPNSILVNTGDHLEVLSNGKYKSVLHRAVVNNKTTRISLALSNGPLLDTVVEPVPELSHPLKYVGMAYKEYLELQQGNKLDGKTCLDRVRIRTIEVCLEYTQSIRKVVGELLRGISKSLGLEEWYIDKTMNMDSGLQILIANLYPPCPQPEYAMGLPPHSDHSFLTLLIQNGIGGLQVQHKGHWVDVNPIPNSILVNTGDHLEVLSNGKYKSILHRAVVNNKTTRISLAVSNGPSLDTVVEPAPELSQPSTYVGMTFKEYLELQQGNKLDGKTCLDRVRIKTM* 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15940750 15957435 + Vvi3g991 Vvi3g991 784666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g991 559 Gene3D - 362 557 IPR027443 -
Vvi3g991 559 Pfam 2OG-Fe(II) oxygenase superfamily 228 317 IPR044861 -
Vvi3g991 559 Pfam 2OG-Fe(II) oxygenase superfamily 414 506 IPR044861 -
Vvi3g991 559 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 221 321 IPR005123 -
Vvi3g991 559 SUPERFAMILY Clavaminate synthase-like 38 358 - -
Vvi3g991 559 SUPERFAMILY Clavaminate synthase-like 370 547 - -
Vvi3g991 559 PANTHER FLAVONOL SYNTHASE/FLAVANONE 3-HYDROXYLASE 369 544 - -
Vvi3g991 559 PANTHER FLAVONOL SYNTHASE/FLAVANONE 3-HYDROXYLASE 30 356 - -
Vvi3g991 559 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 30 356 - -
Vvi3g991 559 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 369 544 - -
Vvi3g991 559 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 410 510 IPR005123 -
Vvi3g991 559 Gene3D - 30 356 IPR027443 -
Vvi3g991 559 Pfam non-haem dioxygenase in morphine synthesis N-terminal 68 170 IPR026992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g991 - - - vvi:100246869 723.005
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g991 . . . . . . . Bma12g00371 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0987 . . . . . . . . . . . . . . . . . . . . . . Cpe14g00199 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003038 0 2 2 2 1 1 1 1 1 1 1 1 1 1 2 0 1 4 1 1 1 3 2 3 3 2 4 3 1 5 52