Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g995 ATGGAGGAGCTGTCCCATGTTTGCCTGTCTGCTGTGGATAAGCTTGCTGTGGAGATGGACAAAATATATGCCAAGATCCAAAACCTCTCTATCCACCGGCCAACAGCAGTCAACCCACAAGGTCAAAGTAGGAACCCAAAGTCTACCTTGGGTTCTACCGCCCGAATCCCACGACAGCCAACAACGCAAGAACCTGATCTCGCTAGCTTTGGTGATGATGTGCATGCAATGATAGCACGGTTGCTTACAGATGATGAGAGTTTCAGAGTGATTCCAATTATGGGTATGCAAGGCATCGGAAAGACAACCCTAGCAAATTTGATCTTTAACCATAAAGCTGTTGTGGATCATTTCCCCTTTGCTGTTTGGAGGTCAGATGGCTATCGACTTCAGCTTCGTAACAAGGAAGAATTGATGGAGTCCGATCTAAGTCAATTGGGAGATGTGTGGAGTTATGATGACGAGATGCAACGACTGAAAGCTTTCTTGATTAATAACAGGTCTCTCATAGTTCTAGATGATTCGCATCTCTTGTACGACATGCTAGAAGTGCTCCCAGATACATTAAATGGCAGTAGAATGATTTTGACTACTTGCGAAACAAGGCTACCTCCAAATCTCAAAATGAAGAGTGATCCTCACCAACTGCGGTTACGGACAGATGAGGAGAGTTGGGCATTGTTTACCCATGCTTTGAAATTTAGCATACCCCCAGAATTGCTAAAGCTGAAAGACGAAATTGCAAAAAGATGTGGGGGGTTGCCACTGCTGATTGTAAAATTGGGGGAAGCACTCTCACACAAGGATGCAACCATTGAGGAGTGGTCCACTGCACTTCAACAATTTCATCATGACCAACAGCAACTTTGGCCCAATACCATCTACAAGATCCATAAGGATTTGTCCTTGTACATGAGGAGATGTCTATTTTATTTCACTCTATTTCCTCAAGATTTTGATATTCCGGCAAGAAGATTGATAACATTGTGGGTTGCAGAGGACTTGGTACAGCCAGAGGGCGAGAATGAAACTCCAGAAGATGTTGCAGAAAGGTGTTTGAATTTCTTGATAGCCCAGGGAATGGTTCAAGTGACAAAGAAGAAGCTTAATGGGAATGTTAAAATGGTGCGATTGCCCGATGCCCTAAGACAATATTGGTCATCCAAAGCTCAACAAGCCACATTTCTTGGAGTTCATACTAACACAAGATCTGAGTTGTCCCTAGGCACCAATAAGATCCGTCGTCTGGTTGATCATCTTGATGAAGAAGATATCAGCTTTGATCATATTCATGGTAATCACAACAGAACTTCTAGTACTTCTTTGACACCTTGCTACAAAGACGCACTTTCTTTTCTGTCCTTTGATACTCGAGAAGAAAGCAAACCAGGAGAAGAAGTGGGAAACTTTCTTCATCAAAGCATATCCAGTGGTGGCTTCCTAGTGCTGCTCGTGCTTGATCTCGAAAATGTATTCAGACCAAAGTTACCTGAGGCAATTGGCAAACTAACTCGACTAAGGTACCTTGGCTTAAGATCTACATTCCTCGAGATACTTCCATCATCTATAAGCAAGTTGCAGAATGTTCAAACACTGGACATGAAGCATACTTGCATCAACGCTCTTCCTTATTCAATCTGGAAGCTACAACAATTGCGACACTTACACTTGAGTGGGAGTTGTCGAAGTAAACTTATGCTTCGACATGATACAAATATTCCTACTATCCTCCAAACATTGTGTGGGCTTCTTGTAGATGAGGAGACTCCCGTAAGAGATGGCCTAGACAGGTTACTCGATATTAGGAAATTGGGATTGACAGTATCATCTAAACAAGAGGCAATAACATTGCAACTGCAGGCAGTAGTTGACTGGGTTCTAAAACTGAACCAACTCCGGTCTTTAAGGCTCAAATCTATTGATGAAAGCAATCAGCCATGGGATCTAGAGTTGAAGCCTTTAGTAAGCCTTGTGAATCTTTCTTACATTTACTTGCTCGGACGGTTAAGGAATCCATCCATTATGTCCCAATTCCCATACAGCCTCATCGACCTCACCTTATCAGGGTCAGGACTTGTAGAAGATCCAATGCAGTCACTGGATAAGCTTCCCAACCTTAGAAGTCTTAAATTGATTGCCAAATCTTATTTAGGGAAGAACATGCTTTGCTCTTTAGGAGGCTTTCCTCAGCTTCGAGTTCTTAAACTATGGAAGTTAGAGCAACTGGAGGAATGGAATGTAGAGAAAGGAGCACTACGAGCTCTTCGAGATTTGGAGATTAGGTTCTGCAGAAGTCTGAAAATTCTTCCTGCAGAATTGCTACATAGAACTCTCTTGAAAATTGAAATTATATCTGCCCAGGTGTGA 2367 42.59 MEELSHVCLSAVDKLAVEMDKIYAKIQNLSIHRPTAVNPQGQSRNPKSTLGSTARIPRQPTTQEPDLASFGDDVHAMIARLLTDDESFRVIPIMGMQGIGKTTLANLIFNHKAVVDHFPFAVWRSDGYRLQLRNKEELMESDLSQLGDVWSYDDEMQRLKAFLINNRSLIVLDDSHLLYDMLEVLPDTLNGSRMILTTCETRLPPNLKMKSDPHQLRLRTDEESWALFTHALKFSIPPELLKLKDEIAKRCGGLPLLIVKLGEALSHKDATIEEWSTALQQFHHDQQQLWPNTIYKIHKDLSLYMRRCLFYFTLFPQDFDIPARRLITLWVAEDLVQPEGENETPEDVAERCLNFLIAQGMVQVTKKKLNGNVKMVRLPDALRQYWSSKAQQATFLGVHTNTRSELSLGTNKIRRLVDHLDEEDISFDHIHGNHNRTSSTSLTPCYKDALSFLSFDTREESKPGEEVGNFLHQSISSGGFLVLLVLDLENVFRPKLPEAIGKLTRLRYLGLRSTFLEILPSSISKLQNVQTLDMKHTCINALPYSIWKLQQLRHLHLSGSCRSKLMLRHDTNIPTILQTLCGLLVDEETPVRDGLDRLLDIRKLGLTVSSKQEAITLQLQAVVDWVLKLNQLRSLRLKSIDESNQPWDLELKPLVSLVNLSYIYLLGRLRNPSIMSQFPYSLIDLTLSGSGLVEDPMQSLDKLPNLRSLKLIAKSYLGKNMLCSLGGFPQLRVLKLWKLEQLEEWNVEKGALRALRDLEIRFCRSLKILPAELLHRTLLKIEIISAQV* 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16159522 16162192 + Vvi3g995 Vvi3g995 784670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g995 788 Pfam NB-ARC domain 73 307 IPR002182 GO:0043531
Vvi3g995 788 Gene3D - 48 211 IPR027417 -
Vvi3g995 788 MobiDBLite consensus disorder prediction 34 66 - -
Vvi3g995 788 Gene3D - 220 298 IPR042197 -
Vvi3g995 788 Coils Coil 788 788 - -
Vvi3g995 788 PRINTS Disease resistance protein signature 90 105 - -
Vvi3g995 788 PRINTS Disease resistance protein signature 162 176 - -
Vvi3g995 788 PRINTS Disease resistance protein signature 251 265 - -
Vvi3g995 788 PRINTS Disease resistance protein signature 750 766 - -
Vvi3g995 788 Gene3D Ribonuclease Inhibitor 456 785 IPR032675 -
Vvi3g995 788 PANTHER DISEASE RESISTANCE PROTEIN RP 9 787 IPR044974 GO:0006952
Vvi3g995 788 Pfam Leucine rich repeat 505 559 IPR001611 GO:0005515
Vvi3g995 788 PANTHER - 9 787 - -
Vvi3g995 788 Gene3D - 299 390 IPR036388 -
Vvi3g995 788 MobiDBLite consensus disorder prediction 34 68 - -
Vvi3g995 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 311 IPR027417 -
Vvi3g995 788 SUPERFAMILY L domain-like 478 780 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g995 - - - vvi:104878948 1543.1
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g995 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .