Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g997 ATGTTATTATATATCAATATTTTGTATTTTTGGTCTATTAATTTTACTGAGCTTGATGACAAGTCCATGGACTTGAGCCCGAAGTACAAAATGGGCAAGGGCCTACCTCACCTTCACAAAACCTCACTTGATTATTACCTATTGTTGCCCAAAAATCTCAACCATGGCTGCCTCCACTCTCTCCTCTGCAACCCCTTCTCAGGTCTGTGTATGAATGGGGTGTTGTCACCATCCCATGCTCTGCTGCCCAAGCTCACAAGGATGAGTCCATTTGTGGGGAAGGGAAAGGGCTTGAAGATCAAGTGCCAGGCCACCAGCATTCCGGCCAATCGAGTTCCTGACATGGGCAAGAGAAAGCTCATGAACTTGCTTTTGTTGGGTGTTGTTTCCCTCCCCTCAGCTGGCATGTTGATTCCTTATGCCACCTTCTTTGCACCTCCTGGAACAGGATCTGCTGGAGGTGGTACTGTGGCCAAGGATGCACTTGGAAATGATGTCATTGCAGATGAATGGCTTAAGACTCATGGCCCTGGTGACAGAACCCTAACACAAGGGTTGAAGGGAGACCCCACCTACCTTGTTGTGGAGGATGACAAAACCCTTGCCACCTATGGTATTAACGCGGTCTGCACCCATCTTGGGTGTGTTGTGCCGTGGAATACAGCTGAGAACAAGTTCATCTGCCCATGCCATGGATCTCAGTACAACAACCAAGGCAGGGTTGTCAGAGGACCTGCTCCTCTGTCATTGGCGCTGGCGCATGCAGATATTGATGACGGGAAGGTAGTGTTTATTCCTTGGGTTGAGACAGATTTCAGAACAGGTGAAGATCCATGGTGGGCCTAA 846 48.7 MLLYINILYFWSINFTELDDKSMDLSPKYKMGKGLPHLHKTSLDYYLLLPKNLNHGCLHSLLCNPFSGLCMNGVLSPSHALLPKLTRMSPFVGKGKGLKIKCQATSIPANRVPDMGKRKLMNLLLLGVVSLPSAGMLIPYATFFAPPGTGSAGGGTVAKDALGNDVIADEWLKTHGPGDRTLTQGLKGDPTYLVVEDDKTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFIPWVETDFRTGEDPWWA* 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16198325 16210046 - Vvi3g997 Vvi3g997 784672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g997 281 CDD Rieske_cytochrome_b6f 156 281 - -
Vvi3g997 281 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 94 278 IPR014349 GO:0051537
Vvi3g997 281 SUPERFAMILY ISP domain 110 280 IPR036922 GO:0051537
Vvi3g997 281 Pfam Rieske [2Fe-2S] domain 187 250 IPR017941 GO:0051537
Vvi3g997 281 Gene3D Single helix bin 103 146 - -
Vvi3g997 281 PANTHER CYTOCHROME B6-F COMPLEX IRON-SULFUR SUBUNIT 94 278 - -
Vvi3g997 281 Hamap Cytochrome b6-f complex iron-sulfur subunit [petC]. 104 281 IPR023960 GO:0016020|GO:0045158|GO:0051537
Vvi3g997 281 Gene3D - 147 281 IPR036922 GO:0051537
Vvi3g997 281 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 168 264 IPR017941 GO:0051537
Vvi3g997 281 PRINTS Rieske 2Fe-2S subunit signature 205 216 IPR005805 GO:0016020|GO:0051537
Vvi3g997 281 PRINTS Rieske 2Fe-2S subunit signature 226 238 IPR005805 GO:0016020|GO:0051537
Vvi3g997 281 PRINTS Rieske 2Fe-2S subunit signature 238 250 IPR005805 GO:0016020|GO:0051537
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g997 K02636 petC; cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6] - vvi:100258879 403.675
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g997 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .