Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi3randomg10 | ATGAATGGGGTGCAGGATGTTCACCACAATCATTTGTATGTCCCTGGCTCAGATTTTGCTCCGGTCGCCGGAGGAGGAGGCGGTGGTGGTGGAGTTGATCAGCTGACGCTCTCGTTTCAGGGCGAGGTTTATGTTTTTGACGCGGTTTCGCCTGAAAAGGTGCAGGCAGTGTTGTTGCTTCTGGGCGGGTATGAAGTTCCTACAGGGATTCCAGCCCCTGGAATGGTCCCTCCTAATCAAAGGGGCTTGGCTGACTTTACTGGAAGGTCTAGTCAGCCTCAGAGAGCTGCCTCTTTGAGTCGATTCAGGGAGAAGAGAAAAGAACGATGCTTTGATAAAAAAATCCGTTACACGGTTCGGAAAGAAGTCGCCCTCAGGATGCAGCGTAAGAAGGGTCAGTTTACATCATCAAAGGCAAGTTCTGATGAAGTAGGTGGAGGGGCTTCCTCAGATTGGAATGCGGCACATGGTTCTGGACAAGATGAGCCAGAAATTCTATGTACACACTGTGGAACCAGTTCAAAGACAACTCCAATGATGCGTCGTGGGCCAGCTGGCCCAAGGTCTTTGTGCAATGCATGTGGGCTCAAGTGGGCTAACAAGGGAGTTCTAAGAGACCTTTCTAGGGTTTCAAGTGGAGTCCAGGAAACTTCTCTGAAGGCAACTCAGAGTAATGGTGATGCCAATGAATCTGGTGCCATAACCACAGTTCCCGACATTGTTAGTTCTAACGGTGATAACTCAGCTGTGACTGCTGAAAGGTGA | 765 | 49.8 | MNGVQDVHHNHLYVPGSDFAPVAGGGGGGGGVDQLTLSFQGEVYVFDAVSPEKVQAVLLLLGGYEVPTGIPAPGMVPPNQRGLADFTGRSSQPQRAASLSRFREKRKERCFDKKIRYTVRKEVALRMQRKKGQFTSSKASSDEVGGGASSDWNAAHGSGQDEPEILCTHCGTSSKTTPMMRRGPAGPRSLCNACGLKWANKGVLRDLSRVSSGVQETSLKATQSNGDANESGAITTVPDIVSSNGDNSAVTAER* | 255 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi3randomg10 | 254 | ProSiteProfiles | CCT domain profile. | 95 | 137 | IPR010402 | GO:0005515 | |
Vvi3randomg10 | 254 | MobiDBLite | consensus disorder prediction | 130 | 147 | - | - | |
Vvi3randomg10 | 254 | MobiDBLite | consensus disorder prediction | 129 | 163 | - | - | |
Vvi3randomg10 | 254 | Pfam | GATA zinc finger | 167 | 203 | IPR000679 | GO:0006355|GO:0043565 | |
Vvi3randomg10 | 254 | MobiDBLite | consensus disorder prediction | 218 | 254 | - | - | |
Vvi3randomg10 | 254 | ProSiteProfiles | GATA-type zinc finger domain profile. | 161 | 217 | IPR000679 | GO:0006355|GO:0043565 | |
Vvi3randomg10 | 254 | Gene3D | - | 165 | 227 | IPR013088 | GO:0006355|GO:0008270 | |
Vvi3randomg10 | 254 | CDD | ZnF_GATA | 167 | 220 | IPR000679 | GO:0006355|GO:0043565 | |
Vvi3randomg10 | 254 | SMART | tify_2 | 28 | 63 | IPR010399 | - | |
Vvi3randomg10 | 254 | SMART | GATA_3 | 161 | 214 | IPR000679 | GO:0006355|GO:0043565 | |
Vvi3randomg10 | 254 | Pfam | tify domain | 34 | 62 | IPR010399 | - | |
Vvi3randomg10 | 254 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 1 | 252 | IPR045280 | GO:0006355 | |
Vvi3randomg10 | 254 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 162 | 223 | - | - | |
Vvi3randomg10 | 254 | ProSitePatterns | GATA-type zinc finger domain. | 167 | 194 | IPR000679 | GO:0006355|GO:0043565 | |
Vvi3randomg10 | 254 | Pfam | CCT motif | 95 | 137 | IPR010402 | GO:0005515 | |
Vvi3randomg10 | 254 | ProSiteProfiles | Tify domain profile. | 28 | 63 | IPR010399 | - | |
Vvi3randomg10 | 254 | PANTHER | GATA TRANSCRIPTION FACTOR 18 | 1 | 252 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14694 | PF06203 | CCT | 3.20E-15 | CL0281 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi3randomg10 | - | - | vvi:100260825 | 504.597 |