Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3randomg10 ATGAATGGGGTGCAGGATGTTCACCACAATCATTTGTATGTCCCTGGCTCAGATTTTGCTCCGGTCGCCGGAGGAGGAGGCGGTGGTGGTGGAGTTGATCAGCTGACGCTCTCGTTTCAGGGCGAGGTTTATGTTTTTGACGCGGTTTCGCCTGAAAAGGTGCAGGCAGTGTTGTTGCTTCTGGGCGGGTATGAAGTTCCTACAGGGATTCCAGCCCCTGGAATGGTCCCTCCTAATCAAAGGGGCTTGGCTGACTTTACTGGAAGGTCTAGTCAGCCTCAGAGAGCTGCCTCTTTGAGTCGATTCAGGGAGAAGAGAAAAGAACGATGCTTTGATAAAAAAATCCGTTACACGGTTCGGAAAGAAGTCGCCCTCAGGATGCAGCGTAAGAAGGGTCAGTTTACATCATCAAAGGCAAGTTCTGATGAAGTAGGTGGAGGGGCTTCCTCAGATTGGAATGCGGCACATGGTTCTGGACAAGATGAGCCAGAAATTCTATGTACACACTGTGGAACCAGTTCAAAGACAACTCCAATGATGCGTCGTGGGCCAGCTGGCCCAAGGTCTTTGTGCAATGCATGTGGGCTCAAGTGGGCTAACAAGGGAGTTCTAAGAGACCTTTCTAGGGTTTCAAGTGGAGTCCAGGAAACTTCTCTGAAGGCAACTCAGAGTAATGGTGATGCCAATGAATCTGGTGCCATAACCACAGTTCCCGACATTGTTAGTTCTAACGGTGATAACTCAGCTGTGACTGCTGAAAGGTGA 765 49.8 MNGVQDVHHNHLYVPGSDFAPVAGGGGGGGGVDQLTLSFQGEVYVFDAVSPEKVQAVLLLLGGYEVPTGIPAPGMVPPNQRGLADFTGRSSQPQRAASLSRFREKRKERCFDKKIRYTVRKEVALRMQRKKGQFTSSKASSDEVGGGASSDWNAAHGSGQDEPEILCTHCGTSSKTTPMMRRGPAGPRSLCNACGLKWANKGVLRDLSRVSSGVQETSLKATQSNGDANESGAITTVPDIVSSNGDNSAVTAER* 255
       

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3randomg10 254 ProSiteProfiles CCT domain profile. 95 137 IPR010402 GO:0005515
Vvi3randomg10 254 MobiDBLite consensus disorder prediction 130 147 - -
Vvi3randomg10 254 MobiDBLite consensus disorder prediction 129 163 - -
Vvi3randomg10 254 Pfam GATA zinc finger 167 203 IPR000679 GO:0006355|GO:0043565
Vvi3randomg10 254 MobiDBLite consensus disorder prediction 218 254 - -
Vvi3randomg10 254 ProSiteProfiles GATA-type zinc finger domain profile. 161 217 IPR000679 GO:0006355|GO:0043565
Vvi3randomg10 254 Gene3D - 165 227 IPR013088 GO:0006355|GO:0008270
Vvi3randomg10 254 CDD ZnF_GATA 167 220 IPR000679 GO:0006355|GO:0043565
Vvi3randomg10 254 SMART tify_2 28 63 IPR010399 -
Vvi3randomg10 254 SMART GATA_3 161 214 IPR000679 GO:0006355|GO:0043565
Vvi3randomg10 254 Pfam tify domain 34 62 IPR010399 -
Vvi3randomg10 254 PANTHER GATA TRANSCRIPTION FACTOR 28 1 252 IPR045280 GO:0006355
Vvi3randomg10 254 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 162 223 - -
Vvi3randomg10 254 ProSitePatterns GATA-type zinc finger domain. 167 194 IPR000679 GO:0006355|GO:0043565
Vvi3randomg10 254 Pfam CCT motif 95 137 IPR010402 GO:0005515
Vvi3randomg10 254 ProSiteProfiles Tify domain profile. 28 63 IPR010399 -
Vvi3randomg10 254 PANTHER GATA TRANSCRIPTION FACTOR 18 1 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3randomg10 - - - vvi:100260825 504.597
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi9g1014 . 1 164 Tify Gene Family AT3G21175 64.3 5.7e-48 188.0
Vvi3randomg10 . 33 166 Tify Gene Family AT3G21175 65.0 2.0e-37 152.9
Vvi18g531 . 7 208 Tify Gene Family AT4G24470 57.2 3.0e-58 222.6
Vvi3randomg10 . 33 224 Tify Gene Family AT4G24470 54.5 1.7e-48 190.3
Vvi9g1014 . 27 211 Tify Gene Family AT4G24470 55.3 2.3e-45 179.9
Vvi9g1014 . 1 241 Tify Gene Family AT1G51600 64.1 5.6e-78 288.1
Vvi3randomg10 . 33 211 Tify Gene Family AT1G51600 63.8 3.0e-55 212.6
Vvi18g532 . 14 216 Tify Gene Family AT1G51600 53.5 1.4e-49 193.7
Vvi18g531 . 3 209 Tify Gene Family AT1G51600 52.5 1.3e-47 187.2
Vvi18g531 . 7 208 Tify Gene Family AT4G24470 57.2 3.0e-58 222.6
Vvi3randomg10 . 33 224 Tify Gene Family AT4G24470 54.5 1.7e-48 190.3
Vvi9g1014 . 27 211 Tify Gene Family AT4G24470 55.3 2.3e-45 179.9
Vvi9g1014 . 1 241 Tify Gene Family AT1G51600 64.1 5.6e-78 288.1
Vvi3randomg10 . 33 211 Tify Gene Family AT1G51600 63.8 3.0e-55 212.6
Vvi18g532 . 14 216 Tify Gene Family AT1G51600 53.5 1.4e-49 193.7
Vvi18g531 . 3 209 Tify Gene Family AT1G51600 52.5 1.3e-47 187.2
Vvi9g1014 . 1 164 Tify Gene Family AT3G21175 64.3 5.7e-48 188.0
Vvi3randomg10 . 33 166 Tify Gene Family AT3G21175 65.0 2.0e-37 152.9
Vvi5g554 . 1 201 Tify Gene Family AT4G14713 52.7 5.8e-48 188.0
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14694 PF06203 CCT 3.20E-15 CL0281 Vvi TF