Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3randomg10 ATGAATGGGGTGCAGGATGTTCACCACAATCATTTGTATGTCCCTGGCTCAGATTTTGCTCCGGTCGCCGGAGGAGGAGGCGGTGGTGGTGGAGTTGATCAGCTGACGCTCTCGTTTCAGGGCGAGGTTTATGTTTTTGACGCGGTTTCGCCTGAAAAGGTGCAGGCAGTGTTGTTGCTTCTGGGCGGGTATGAAGTTCCTACAGGGATTCCAGCCCCTGGAATGGTCCCTCCTAATCAAAGGGGCTTGGCTGACTTTACTGGAAGGTCTAGTCAGCCTCAGAGAGCTGCCTCTTTGAGTCGATTCAGGGAGAAGAGAAAAGAACGATGCTTTGATAAAAAAATCCGTTACACGGTTCGGAAAGAAGTCGCCCTCAGGATGCAGCGTAAGAAGGGTCAGTTTACATCATCAAAGGCAAGTTCTGATGAAGTAGGTGGAGGGGCTTCCTCAGATTGGAATGCGGCACATGGTTCTGGACAAGATGAGCCAGAAATTCTATGTACACACTGTGGAACCAGTTCAAAGACAACTCCAATGATGCGTCGTGGGCCAGCTGGCCCAAGGTCTTTGTGCAATGCATGTGGGCTCAAGTGGGCTAACAAGGGAGTTCTAAGAGACCTTTCTAGGGTTTCAAGTGGAGTCCAGGAAACTTCTCTGAAGGCAACTCAGAGTAATGGTGATGCCAATGAATCTGGTGCCATAACCACAGTTCCCGACATTGTTAGTTCTAACGGTGATAACTCAGCTGTGACTGCTGAAAGGTGA 765 49.8 MNGVQDVHHNHLYVPGSDFAPVAGGGGGGGGVDQLTLSFQGEVYVFDAVSPEKVQAVLLLLGGYEVPTGIPAPGMVPPNQRGLADFTGRSSQPQRAASLSRFREKRKERCFDKKIRYTVRKEVALRMQRKKGQFTSSKASSDEVGGGASSDWNAAHGSGQDEPEILCTHCGTSSKTTPMMRRGPAGPRSLCNACGLKWANKGVLRDLSRVSSGVQETSLKATQSNGDANESGAITTVPDIVSSNGDNSAVTAER* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3randomg10 254 ProSiteProfiles CCT domain profile. 95 137 IPR010402 GO:0005515
Vvi3randomg10 254 MobiDBLite consensus disorder prediction 130 147 - -
Vvi3randomg10 254 MobiDBLite consensus disorder prediction 129 163 - -
Vvi3randomg10 254 Pfam GATA zinc finger 167 203 IPR000679 GO:0006355|GO:0043565
Vvi3randomg10 254 MobiDBLite consensus disorder prediction 218 254 - -
Vvi3randomg10 254 ProSiteProfiles GATA-type zinc finger domain profile. 161 217 IPR000679 GO:0006355|GO:0043565
Vvi3randomg10 254 Gene3D - 165 227 IPR013088 GO:0006355|GO:0008270
Vvi3randomg10 254 CDD ZnF_GATA 167 220 IPR000679 GO:0006355|GO:0043565
Vvi3randomg10 254 SMART tify_2 28 63 IPR010399 -
Vvi3randomg10 254 SMART GATA_3 161 214 IPR000679 GO:0006355|GO:0043565
Vvi3randomg10 254 Pfam tify domain 34 62 IPR010399 -
Vvi3randomg10 254 PANTHER GATA TRANSCRIPTION FACTOR 28 1 252 IPR045280 GO:0006355
Vvi3randomg10 254 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 162 223 - -
Vvi3randomg10 254 ProSitePatterns GATA-type zinc finger domain. 167 194 IPR000679 GO:0006355|GO:0043565
Vvi3randomg10 254 Pfam CCT motif 95 137 IPR010402 GO:0005515
Vvi3randomg10 254 ProSiteProfiles Tify domain profile. 28 63 IPR010399 -
Vvi3randomg10 254 PANTHER GATA TRANSCRIPTION FACTOR 18 1 252 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14694 PF06203 CCT 3.20E-15 CL0281 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3randomg10 - - vvi:100260825 504.597