Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g10 ATGGAGAGAAACCCATTGCAACGCCAAGTTGCCTACATGAGGAGGTCCCTCTTTGATCAGGGGTACCTTGACGAGCAGTTTGTTCAGCTAGAGGACCTTCAGGATGACGCTAACCCTAATTTTGTGGAGGAAATTGTGACGTTGTTTTATACTGATTCTGCCAGACTCATTCATAACATCGAACAGGCACTGGAGAGCAGACCTCTCGATTTCATCAGGCTAGATGATTACATGCACCAATTCAAGGGTAGTAGCTCAAGCATTGGAGCAAAAAAGGTGAAGAATGAATGCACACAGTTCAGGGAGCATTGCAGTGCAAGGAGTGCAGAAGGGTGTGTTAGGACTTTCCAACAAGTGAAGCAAGAGCATACAATCCTGAGGAGGAAACTTGAAACTTATTTCCAGTTGGCAAGACAAGCTGGACTAGCAAACTAA 435 45.29 MERNPLQRQVAYMRRSLFDQGYLDEQFVQLEDLQDDANPNFVEEIVTLFYTDSARLIHNIEQALESRPLDFIRLDDYMHQFKGSSSSIGAKKVKNECTQFREHCSARSAEGCVRTFQQVKQEHTILRRKLETYFQLARQAGLAN* 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 155643 160125 + Vvi4g10 Vvi4g10 784789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g10 144 Pfam Hpt domain 44 124 IPR008207 GO:0000160
Vvi4g10 144 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 38 133 IPR008207 GO:0000160
Vvi4g10 144 Gene3D HPT domain 3 142 IPR036641 GO:0000160
Vvi4g10 144 PANTHER - 3 142 IPR045871 GO:0000160|GO:0009927|GO:0043424
Vvi4g10 144 PANTHER PSEUDO HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 2-LIKE 3 142 - -
Vvi4g10 144 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 4 139 IPR036641 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g10 K14490 AHP; histidine-containing phosphotransfer peotein - vvi:100252462 290.812
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g10 Vvi11g275 ECH
Vvi4g10 Vvi9g283 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g10 . . . . . . . . . . . . . . Sed02g1237 Cpe07g00202 . Bhi04g00872 Tan02g2543 Cmetu02g0241 . . . . . . . . . . . . . . . . . . . . . . Bda13g01323 . . . Bma02g00080 . . . . Cma12g00238 . . . . . . . . . . . Cla08g01206 Cam08g1667 Cec08g1245 Cco08g1363 Clacu08g1365 . Cre08g1150 . Csa02g02251 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001289 2 6 0 1 2 1 3 1 1 1 2 1 3 3 3 4 1 3 3 1 3 2 2 3 2 3 3 7 5 3 75