Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1001 ATGGCAAGGAGGGAGGGAGTTCGAATTAATGACCTTGCCGCCTCAAATAAAGTCTTCGAGGTGGTTGGGTCTGAATTGAAAAGTCAAAGAAAGCCCAACCATATCTTAAGTCTGTTTTGGATTGAACGCCTTCAAAAACAACATACTCATCACAAGTGTTCTTCCCATCCACAACCCACACCTACCCTCTTCCATAAATCTCTCTTGTATGCAAGTTCAAGCAATCCTGCTGCTGGTTTTTCCGGGCAAGCCATGATTAGAGCTCTAAGTACACGGAGAAGCCACCGCGGGTATGACCAGTTAGGCAAGGAGCAGCCTCTCGTGGGCGCTGAGGAGGCGCAGCTGAAGAGGGTCAAAAGCCTGCCAGCTGGAGTGTTCGGTTCATCCAAAAAATTAGCCCCGGAGTCCACCTCCCAACCCAACCCCCCGTCGAAGCAAACAAAGAAGGCCAGCAAGAGTCACCCTCTGTTTGGCCTCTTCTATGGGCGAAGAAAGGGGAAGACGACAGCCAAGCCAGAATTCTCTCGGTACATAGAGTACGTGAGGGAGGGAGGGGTTTGGGACACGAATTCAAACACGCCTGTAATACATTTCAAGTAA 600 50.0 MARREGVRINDLAASNKVFEVVGSELKSQRKPNHILSLFWIERLQKQHTHHKCSSHPQPTPTLFHKSLLYASSSNPAAGFSGQAMIRALSTRRSHRGYDQLGKEQPLVGAEEAQLKRVKSLPAGVFGSSKKLAPESTSQPNPPSKQTKKASKSHPLFGLFYGRRKGKTTAKPEFSRYIEYVREGGVWDTNSNTPVIHFK* 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18596950 18597674 + Vvi4g1001 Vvi4g1001 785780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1001 199 MobiDBLite consensus disorder prediction 126 153 - -
Vvi4g1001 199 MobiDBLite consensus disorder prediction 131 151 - -
Vvi4g1001 199 PANTHER PROTEIN SHROOM-LIKE 85 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1001 - - - vvi:100254788 405.216
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1001 . Blo16g00054 . . . Bpe13g00436 . . . . . Cma07g00476 Car03g00672 Car07g00419 Sed14g1133 . . Bhi03g01325 Tan03g2000 Cmetu08g1336 . Hepe04g1527 . . Cla01g01921 Cam01g2007 Cec04g1666 Cco04g1727 Clacu01g2028 Cmu01g1903 Cre04g1578 . . . . . . . Cme08g00861 . . . . . . . . . Cmo03g00766 Cmo07g00476 . . . . . . . . . . . . . . . . . . . . . . Chy02g00632 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014800 0 1 1 0 0 0 2 0 0 1 1 1 0 1 1 1 1 0 0 0 1 1 1 0 0 0 0 2 1 1 18