Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1002 ATGAAGTACTCGTCAGAAGCGTCAGAGAGGCGGTCGTTGCCTGGGCTCCTTCCTTTTTTGAAGGCCAGGGAACAGTCCGCAGATCAAATATCATTATGCTTCTTCTCCAAGTCTCTTATTCTTCCCATTAGGGTTTTTGGAACTTCTCCTCTTTTTCCCGGAGCCATGCCAACCTTTACAGCAATTGCGTTAGATAGGTTGTTGGAACCTGGGGCTTCAAAAACAGTCATGAAGTCAGCTTCTGATTTGAAGCCTGTTCCTGATTTGAAGCTGGAAAGGAGAAATAGCACGTCCACAGTGACTACAGAAAACAAACCCCTCTGGTCTCAGATATCCCCAGCCCTCTATGCCACTCCGGAGGCCACCCCGCTTCCTGATTCTCCATCGTCATTCCCTCCATCGCCGTACATCATCAATCACAAGAGGCGAGGGCCACGTCTTATCAAGAGCTTCTCTCAGTATGACGTTCCATCTGGCCAAAAAATTGCTGATGGAGAAGGTGTCAAGGGAAATGCAAAAAACATAGAACCTGTGGTTGTTGAGTCAGCAAACAATGGTCCTGTTACTTTCACTGTTGCTGATCCTATTGTGGAGGAGCCTGTGAATGGCTTCCATAATGAGAAACCTGAAAGCAGTAATTCAAAAAATATTTTTGCCACAGAAAATGGTCCCCTGAAGTCTGATGCGGTGAATTCAGAAAGAGATGGAGATGGAGATGGAGATGGTGATGGTGATGGTGATGGTGATGGTGATGGTGATGATTTCTTTGATCCTCAGGAATCAATGAGTTTTACAAGCAACACTGAAGGAGAGGATTTTAATGGTGCTGAACATTCTTTGAAGCTTACTACTCCAATGGGAGAGTTTTATGATGCTTGGGAAGAACTATCTTCTGAGGGTGCACAACAACCTTCGCATCGTGAGATTGAAGATGAAATGCGTGAAATAAGATTGAGTTTATTGACGGAGATCGAGAAGCGGAAACAAGCAGAAGAAGCACTGAAAAATATGCGAAATGTGTGGCAGACAATTAGCCAACAGTTATCTCTTGTGGGGTTGACACTCCCTGCTGATCTTGCTGTTGTGGGTGAGGATGGGCAACCGGATGTTGATATCGCACAAGAATTGAGCCAACAAGTTTCTATTGCTCGTTTTGTATCAGATTCCATTGGGAGGGGGATTGCGAAAGCTCAGGTGGAGATGGAGATGGAAGCTCAAATAGATTCAAAGAACTTTGAGATTGCTCGGTTATGGGACCGATTGCATTATTATGATGCTGTGAACCGGGAGATGTCTCAGAGGAACCAAGAAGGTTTAGAGTTGGCACGACGAGAGCGGCAATTAAGGAAAAGAAGGCAGAGATGGGTTTGGGGTTCAATTGCTGCTGTCATTACAGTTGGAACTGCAGCCCTAGCATGGTCTTATCTCCCAACAGGACAAGGATCATCTGGAGAAGACCACTTTGAGGCTTCTGAACATGATCATGAAACCAAGTAA 1497 45.29 MKYSSEASERRSLPGLLPFLKAREQSADQISLCFFSKSLILPIRVFGTSPLFPGAMPTFTAIALDRLLEPGASKTVMKSASDLKPVPDLKLERRNSTSTVTTENKPLWSQISPALYATPEATPLPDSPSSFPPSPYIINHKRRGPRLIKSFSQYDVPSGQKIADGEGVKGNAKNIEPVVVESANNGPVTFTVADPIVEEPVNGFHNEKPESSNSKNIFATENGPLKSDAVNSERDGDGDGDGDGDGDGDGDGDDFFDPQESMSFTSNTEGEDFNGAEHSLKLTTPMGEFYDAWEELSSEGAQQPSHREIEDEMREIRLSLLTEIEKRKQAEEALKNMRNVWQTISQQLSLVGLTLPADLAVVGEDGQPDVDIAQELSQQVSIARFVSDSIGRGIAKAQVEMEMEAQIDSKNFEIARLWDRLHYYDAVNREMSQRNQEGLELARRERQLRKRRQRWVWGSIAAVITVGTAALAWSYLPTGQGSSGEDHFEASEHDHETK* 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18598156 18604366 + Vvi4g1002 Vvi4g1002 785781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1002 498 MobiDBLite consensus disorder prediction 238 256 - -
Vvi4g1002 498 PANTHER BACTERIOPHAGE N4 ADSORPTION B PROTEIN 56 498 - -
Vvi4g1002 498 MobiDBLite consensus disorder prediction 206 227 - -
Vvi4g1002 498 MobiDBLite consensus disorder prediction 259 273 - -
Vvi4g1002 498 MobiDBLite consensus disorder prediction 201 274 - -
Vvi4g1002 498 PANTHER BACTERIOPHAGE N4 ADSORPTION B PROTEIN 56 498 - -
Vvi4g1002 498 Coils Coil 320 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1002 - - - vvi:100259904 810.446
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1002 . Blo16g00055 . Bda10g00140 . . . . . . Cma03g00736 . Car03g00671 Car07g00418 Sed14g1136 Cpe19g00818 Cpe10g00624 Bhi03g01326 Tan03g2002 Cmetu08g0549 . Hepe04g1528 . . Cla01g01922 Cam01g2008 Cec04g1667 Cco04g1728 Clacu01g2029 Cmu01g1904 Cre04g1579 Cone8ag0820 . Cone6ag1640 Cone9ag1560 Lsi01g00665 . . Cme08g00862 . Blo06g00138 Bda11g01856 . Bpe10g00122 . . . . . Cmo07g00475 . . . . . . . . . . . . . . . . . . . . . Csa06g03258 Chy02g00631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005787 2 1 1 0 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 0 1 1 1 3 2 1 37