Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1003 ATGGCCCTCCTCGATGACTATGAGTTGGAGGAACTTGACTTTGCCTCCAACCCTAACCATCGCAGTGGATATGTGGCTGTGCTTGGCAAGCCCAATGTTGGAAAGAGTACCCTTGCAAACCAAATGATAGGCCAAAAGTTGTCAATTGTTACTGATAAACCTCAAACCACAAGGCATCGAATCCTTGGTATATGTTCTGGTCCAGAGTATCAGATGATACTTTATGACACACCTGGTGTTATTGAGAAGAAAATGCACAAGTTGGACTCCATGATGATGAAGAATGTCCGCAGTGCTACCATTAATGCGGACTGTGTAGTGGTTCTTGTTGATGCATGTAAGGAACCCCAAAAGATTGATGAAGTGTTGGAAGAAGGTGTGGGAAACCTCAAAGATAAACTACCCACTTTGCTAGTTTTGAATAAGAAAGATCTGATCAAACCTGGTGAAATTGCAAAGAAACTCGAGTGGTATGAGAAATTCATAGATGTTGATGAGGTCATACCAGTGAGTGCCAAGTATGGTCAAGGAGTAGATGATGTCAAGGATTGGATATTGTCAAAACTTCCTCTTGGGCCAGCTTATTATCCAAAGGACATTGTTAGTGAGCACCCGGAAAGATTCTTTGTAGGTGAGATTGTTAGAGAAAAGATCTTCATGCAATATCGTAATGAAGTTCCTTATGCATGTCAGGTCAATGTAGTGAGTTACAAAACTAGACCAACTGCTAAAGATTTTATTCAAGTTGAGATTGTTGTCGAGAAGAACTCACAGAAAATCATCCTCATTGGAAAGGAAGGGAAGGCGCTGAAACTACTTGCAACAGCAGCTCGGCTTGACATTGAAGATTTCTTGCAAAAGAAGGTGTTTCTTGAGGTGGAAGTGAAAGTAAAAGAGAACTGGCGGCAAGATGAAGGGCTTCTTAAGTACTACGGTTATGGAGGCCAAATTCAAGCGCTATAA 963 41.54 MALLDDYELEELDFASNPNHRSGYVAVLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHRILGICSGPEYQMILYDTPGVIEKKMHKLDSMMMKNVRSATINADCVVVLVDACKEPQKIDEVLEEGVGNLKDKLPTLLVLNKKDLIKPGEIAKKLEWYEKFIDVDEVIPVSAKYGQGVDDVKDWILSKLPLGPAYYPKDIVSEHPERFFVGEIVREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKEGKALKLLATAARLDIEDFLQKKVFLEVEVKVKENWRQDEGLLKYYGYGGQIQAL* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18606816 18616260 + Vvi4g1003 Vvi4g1003 785782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1003 320 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 21 191 IPR030388 GO:0005525
Vvi4g1003 320 Pfam KH domain 225 302 IPR004044 GO:0003723
Vvi4g1003 320 PANTHER GTPASE ERA 1 314 IPR005662 GO:0003723|GO:0005525
Vvi4g1003 320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 223 IPR027417 -
Vvi4g1003 320 CDD Era 20 189 IPR030388 GO:0005525
Vvi4g1003 320 Pfam 50S ribosome-binding GTPase 25 142 IPR006073 GO:0005525
Vvi4g1003 320 Gene3D - 203 317 IPR015946 -
Vvi4g1003 320 TIGRFAM era: GTP-binding protein Era 23 296 IPR005662 GO:0003723|GO:0005525
Vvi4g1003 320 Hamap GTPase Era [era]. 20 313 IPR005662 GO:0003723|GO:0005525
Vvi4g1003 320 TIGRFAM small_GTP: small GTP-binding protein domain 25 184 IPR005225 GO:0005525
Vvi4g1003 320 PANTHER GTPASE ERA-LIKE, CHLOROPLASTIC 1 314 - -
Vvi4g1003 320 Gene3D - 18 202 IPR027417 -
Vvi4g1003 320 ProSiteProfiles Type-2 KH domain profile. 222 299 IPR004044 GO:0003723
Vvi4g1003 320 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 198 313 IPR009019 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1003 K03595 era, ERAL1; GTPase - vvi:100265087 608.986
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1003 . . . Bda10g00141 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0771 . . . . Chy07g01293 . . . . . Bpe10g00123 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00550 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010370 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 32