Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1007 ATGGATAGTTTCGATTTCGACAGTGTTAAAGCAGAGAAGGCCAACGCCATGTTAAAGTACCGTCGCCTGCGAAACGTCACGAAGTTGTTCCGTTTCGCGGAACTCTTCCTCGTTCTGATCTTGTTCTTCTGGATTTTCACTCACCTTCCATTCGCCATCCAAATCTCCGGCGAGTATTTCCGGAAAATCTCGACAGTTATCGCCAGCCATCTATTCGTTTTCTTATTCTGTAACGCAATCATCGAGCCAGAGGTGGTTGTGTATGAGGACAAACAGATGATATGTGCAGCGAACACTCTGCGTCCTACATGTGAAAAAGTGGTTCCAACAGTCACGGACTCAAAAAGGGATTCGTACGTGAAAGTTTATCGTCGGAGTCAGTCGGAGAAGTTGAATCGAGACCGTTCGGAGAAATCTCGCAGAATACTGCAGCGATCGGATACAGAGAAATGCCAACAAATTGTAATCTCCGGGGACGATCCGGCGAAAACTTGGTATCCGGAGGACGAGTTGAGTAACGAGGATTTCCAGCGCACGATAGAGGCTTTCATTGCGAGGGAGCTGAGATTTCGTCGACAGGAGTCTTTAGCTATTGTTTTACAAGATCAGAACTGA 615 46.83 MDSFDFDSVKAEKANAMLKYRRLRNVTKLFRFAELFLVLILFFWIFTHLPFAIQISGEYFRKISTVIASHLFVFLFCNAIIEPEVVVYEDKQMICAANTLRPTCEKVVPTVTDSKRDSYVKVYRRSQSEKLNRDRSEKSRRILQRSDTEKCQQIVISGDDPAKTWYPEDELSNEDFQRTIEAFIARELRFRRQESLAIVLQDQN* 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18633897 18634656 + Vvi4g1007 Vvi4g1007 785786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1007 204 PANTHER TRNA-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT TRM6MTASE SUBUNIT 82 203 - -
Vvi4g1007 204 PANTHER TRNA-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT TRM6MTASE SUBUNIT 1 81 - -
Vvi4g1007 204 PANTHER TRANSMEMBRANE PROTEIN 1 81 - -
Vvi4g1007 204 PANTHER TRANSMEMBRANE PROTEIN 82 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1007 - - - vvi:100263337 375.941
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1007 . Blo16g00056 . . Bpe15g00420 Bpe13g00434 . . . . . . . . Sed10g0929 . . Bhi03g01329 Tan03g2006 Cmetu08g0691 . Hepe04g1532 . . . . . . . . . . Cone12ag0772 Cone6ag1643 Cone9ag1563 . . . . . . Bda11g01854 . . . Bma03g00983 Bma06g00113 Sed01g0292 . . . Cma20g00838 . . . . Bhi10g01986 Tan05g1285 Cmetu11g1831 . Hepe08g1002 . . . . . . . . . Lsi07g00247 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008444 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 1 35