Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1008 ATGTTGGTCAATAATTCCGGCCCAAGTACTGTCCAGATCGTTAGGCTTTCTCTGAATTGGGCTTGTATGGATGTTGAGAAAGCCTTCCACATGACAGGAGGAGTAGGAGAAACTAGCTATGCTAGAAATTCTTCACTTCAGAAGAAGGCTTCTGATGTGGTGAAACACATAACCATAGAGACAATTCAACAACTTTATCTTACGACAACTCCAAGGAGCTTAGGCATAGCTGATTTAGGTTGTTCATCCGGGCCAAATACATTATCATTTATCAAAGATATCTTTGATGCTGTTGAAGGGACAAGCAGTCAAACTTTGCTTCCTGCGCCAGAATTCCGAGTTTACCTCAATGATCTTCCCACCAATGACTTCAACACAATCTTTAAGGCCTTGCCAGATTTCTACAAGGAGCTCAGAAAAGGAAGCAACGGGCGTCCATCAATTTTCATTGCAGGTTTTCCAGGATCATTCTATGGAAGACTTTTTCCCGACAATTGCCTGCACTTCATCTATTCCTCCTACGGTTTGCACTGGCTCTCCCAGGTTCCTCCGGCTCTTTATGACGAGCAGGGCAGATCAATAAATAAAGGCAATATCTATATTTCAAAATCCAGCCCTCCAAGTGTGTCTGAATTATACTTGAGGCAATTTCAAGAGGACTTCGCACTCTTCCTCCGGTCACGATCTGAAGAGCTGATTGAGGGAGGAAGAATGGTGCTGATCCTATTGGGAAGGAGAGGTCCAGATCATGCTGATAGAGGCAACACGTTCTTCTGGGAGCTCCTCTCTCGATCCCTAGCCATTTTGGTTTCTTGGGGAGAAGTTGAGGAGGAAAAGCTCCACTCTTATGCAGTTAATTTTTATGCGCCAACGAAAGAAGAAATAGAAGAGGAAGTGAGAAGAGAGGGTTCTTTTGAATTGGATCGGGTGGAGATGTTTGAAATAGAAAAAGATGGTGCGGATGATATGAGCTATGGAACCCAAGTTGCAAGGACAGTTAGAGCTATCCAGGAATCAATGATTAGCCTCCACTTTGGAGAAGGAATTGCAGATAGTTTGTTTGAGAACTATGGAAGACTGGTGGATGAAGAAATGGCTAAGGAAGATATCAGGCCCATCACTTTTCTTCTGGTCCTTAGAAAAAGTATGATATGA 1155 43.29 MLVNNSGPSTVQIVRLSLNWACMDVEKAFHMTGGVGETSYARNSSLQKKASDVVKHITIETIQQLYLTTTPRSLGIADLGCSSGPNTLSFIKDIFDAVEGTSSQTLLPAPEFRVYLNDLPTNDFNTIFKALPDFYKELRKGSNGRPSIFIAGFPGSFYGRLFPDNCLHFIYSSYGLHWLSQVPPALYDEQGRSINKGNIYISKSSPPSVSELYLRQFQEDFALFLRSRSEELIEGGRMVLILLGRRGPDHADRGNTFFWELLSRSLAILVSWGEVEEEKLHSYAVNFYAPTKEEIEEEVRREGSFELDRVEMFEIEKDGADDMSYGTQVARTVRAIQESMISLHFGEGIADSLFENYGRLVDEEMAKEDIRPITFLLVLRKSMI* 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18646488 18655154 - Vvi4g1008 Vvi4g1008 785787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1008 384 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 24 380 IPR005299 GO:0008168
Vvi4g1008 384 PANTHER OS01G0701700 PROTEIN 24 380 - -
Vvi4g1008 384 Pfam SAM dependent carboxyl methyltransferase 60 381 IPR005299 GO:0008168
Vvi4g1008 384 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 23 381 IPR029063 -
Vvi4g1008 384 Gene3D - 29 368 IPR042086 -
Vvi4g1008 384 Gene3D Vaccinia Virus protein VP39 43 316 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1008 - - - vvi:100241069 714.916
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1008 . . . . Bpe15g00419 . . . . Cmo16g00683 Cma03g00732 . . . . . . . . . . . . . . . . . . . . Cone8ag0823 . . . . . Chy07g01249 . . . . . . . . . . . . Cma16g00627 . . . . Cpe14g00535 . . . . . . . Cla07g00819 Cam07g0883 Cec07g0936 Cco07g0924 Clacu07g0858 Cmu07g0861 Cre07g1220 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006385 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 3 2 1 37