Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1019 ATGGAAGTAGTGCAAGTGCTTTGCATGAAGGGAGGAAATGGGGATACCAGTTACGCACAAAACTCACTACTTCAGAAAAAAGTAATATCCTTGACAAAGCCCATAACCGACGAAGCAATATCAAATCTCTTCTGCAACAACTTTCCGGCCAGGCTATGTATCGCAGACTTGGGTTGTTCTTCTGGACCCAACACTTTGTTTGCAGTCTTGGAATTCGTCACTACAGTGGACAAGGTGCACAAGAAAATGGGGCATGAATTGCCCGAAATTCAAGTGTTTTTGAATGATCTGCCGGGGAATGATTTCAACACCATTTTCAAATCCTTGCCCACTTTCCAAAAAGATCTTCAGAAAACAATGGGAGCAGGCGCTGAATCATGTTTTGTAACCGGAGTTCCAGGTTCTTTCTACGGCAGGCTCTTCCTGGGCAAAAGTCTTCATTTTGTCCATTCTTCTTACAGTCTCCAATGGCTGTCTCAGGTTCCTCGAGGACTGGAGAGTAACAAAGGGAACATTTACATGGCAAGTTCGAGCCCACCAAGCGTGCTTAAAGCATACTATGAGCAATTCCAAACCGATTTCTCCATGTTCCTCAGGTGTCGGTCTGAGGAACTACTGGAAGGAGGGAGTATGGTTTTAACATTTTTAGGAAGAATAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTACATTTGGGAGCTCTTAGCTGTGGCTCTCAACGATATGGTGGCAGAGGGGCTCGTAGAGGAGGAGAAAATGGATTCCTTCAATATTCCTCAGTATACACCATCCCCAGCTGAAGTAAAATGTGAGGTTGAAAAGGAAGGATCCTTTACCATAAATAGGCTGGAGGCTTCTGAAGTCAACTGGAACGCGTATCACGAGGAAGTGTTCAGCAGGTACCAAAAGATTGTGGCTGATCGCATGTCCAGAGAGAAGACTGAGTTCGTAAATGTCACTGTTTCCATGACTAAGCGTGGATAA 984 44.61 MEVVQVLCMKGGNGDTSYAQNSLLQKKVISLTKPITDEAISNLFCNNFPARLCIADLGCSSGPNTLFAVLEFVTTVDKVHKKMGHELPEIQVFLNDLPGNDFNTIFKSLPTFQKDLQKTMGAGAESCFVTGVPGSFYGRLFLGKSLHFVHSSYSLQWLSQVPRGLESNKGNIYMASSSPPSVLKAYYEQFQTDFSMFLRCRSEELLEGGSMVLTFLGRISEDPSSKECCYIWELLAVALNDMVAEGLVEEEKMDSFNIPQYTPSPAEVKCEVEKEGSFTINRLEASEVNWNAYHEEVFSRYQKIVADRMSREKTEFVNVTVSMTKRG* 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18771261 18772949 - Vvi4g1019 Vvi4g1019 785798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1019 327 Gene3D Vaccinia Virus protein VP39 21 289 IPR029063 -
Vvi4g1019 327 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 294 325 - -
Vvi4g1019 327 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 1 292 - -
Vvi4g1019 327 Pfam SAM dependent carboxyl methyltransferase 38 294 IPR005299 GO:0008168
Vvi4g1019 327 Gene3D - 6 297 IPR042086 -
Vvi4g1019 327 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 294 325 IPR005299 GO:0008168
Vvi4g1019 327 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 1 292 IPR005299 GO:0008168
Vvi4g1019 327 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 326 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1019 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - vvi:100253073 642.884
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1019 Vvi18g981 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1019 . . . . . . . . . . Cma03g00730 . . . . . . . . . . . . . . . . . . . . . . . . Lsi01g00658 . . Cme08g00869 Blo05g00807 . . . . . . . . Cmo03g00758 Cmo07g00472 . . . . . . . . . . . . . . . . . . . . . . Chy02g00625 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218